7U45 image
Deposition Date 2022-02-28
Release Date 2022-09-28
Last Version Date 2023-10-25
Entry Detail
PDB ID:
7U45
Keywords:
Title:
[L344] Self-assembling tensegrity triangle with three turns, four turns and four turns of DNA per axis by extension and linker addition with P1 symmetry
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
8.05 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*AP*CP*GP*AP*GP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*AP*AP*GP*A)-3')
Chain IDs:A
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*GP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3')
Chain IDs:D (auth: B)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (31-MER)
Chain IDs:F (auth: C)
Chain Length:31
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*AP*TP*CP*TP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3')
Chain IDs:C (auth: D)
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*TP*TP*AP*GP*CP*AP*TP*AP*GP*GP*CP*AP*GP*TP*CP*GP*TP*GP*GP*CP*TP*CP*G)-3')
Chain IDs:B (auth: E)
Chain Length:24
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3')
Chain IDs:E (auth: F)
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*AP*CP*CP*GP*AP*TP*CP*AP*CP*CP*TP*GP*CP*CP*AP*CP*CP*GP*TP*A)-3')
Chain IDs:G (auth: M)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*TP*TP*GP*CP*TP*GP*AP*CP*GP*AP*TP*CP*TP*AP*GP*CP*AP*GP*AP*G)-3')
Chain IDs:J (auth: U)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*TP*CP*TP*CP*TP*GP*CP*TP*AP*GP*AP*TP*CP*GP*TP*CP*AP*GP*CP*A)-3')
Chain IDs:K (auth: V)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*CP*TP*AP*GP*GP*CP*TP*AP*AP*CP*TP*CP*GP*CP*TP*AP*GP*CP*G)-3')
Chain IDs:H (auth: X)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*CP*CP*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*TP*AP*GP*CP*CP*TP*AP*G)-3')
Chain IDs:I (auth: Y)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants.
Adv Mater 34 e2206876 e2206876 (2022)
PMID: 36100349 DOI: 10.1002/adma.202206876

Abstact

The DNA tensegrity triangle is known to reliably self-assemble into a 3D rhombohedral crystalline lattice via sticky-end cohesion. Here, the library of accessible motifs is expanded through covalent extensions of intertriangle regions and sticky-end-coordinated linkages of adjacent triangles with double helical segments using both geometrically symmetric and asymmetric configurations. The molecular structures of 18 self-assembled architectures at resolutions of 3.32-9.32 Å are reported; the observed cell dimensions, cavity sizes, and cross-sectional areas agree with theoretical expectations. These data demonstrate that fine control over triclinic and rhombohedral crystal parameters and the customizability of more complex 3D DNA lattices are attainable via rational design. It is anticipated that augmented DNA architectures may be fine-tuned for the self-assembly of designer nanocages, guest-host complexes, and proscriptive 3D nanomaterials, as originally envisioned. Finally, designer asymmetric crystalline building blocks can be seen as a first step toward controlling and encoding information in three dimensions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures