7TYD image
Deposition Date 2022-02-12
Release Date 2022-11-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7TYD
Title:
Crystal structure of FGFR4 domain 3 in complex with a de novo-designed mini-binder in P21 space group
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.86 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fibroblast growth factor receptor 4
Gene (Uniprot):FGFR4
Chain IDs:A, C
Chain Length:132
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Binder
Chain IDs:B, D
Chain Length:64
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Isoform-specific inhibition of FGFR signaling achieved by a de-novo-designed mini-protein.
Cell Rep 41 111545 111545 (2022)
PMID: 36288716 DOI: 10.1016/j.celrep.2022.111545

Abstact

Cellular signaling by fibroblast growth factor receptors (FGFRs) is a highly regulated process mediated by specific interactions between distinct subsets of fibroblast growth factor (FGF) ligands and two FGFR isoforms generated by alternative splicing: an epithelial b- and mesenchymal c-isoforms. Here, we investigate the properties of a mini-protein, mb7, developed by an in silico design strategy to bind to the ligand-binding region of FGFR2. We describe structural, biophysical, and cellular analyses demonstrating that mb7 binds with high affinity to the c-isoforms of FGFR, resulting in inhibition of cellular signaling induced by a subset of FGFs that preferentially activate c-isoforms of FGFR. Notably, as mb7 blocks interaction between FGFR with Klotho proteins, it functions as an antagonist of the metabolic hormones FGF19 and FGF21, providing mechanistic insights and strategies for the development of therapeutics for diseases driven by aberrantly activated FGFRs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures