7TYB image
Deposition Date 2022-02-11
Release Date 2022-05-18
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7TYB
Title:
Salicylate Adenylate PchD from Pseudomonas aeruginosa containing salicyl-AMS
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pyochelin biosynthesis protein PchD
Gene (Uniprot):pchD
Chain IDs:A
Chain Length:547
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PAO1
Ligand Molecules
Primary Citation
Rational inhibitor design for Pseudomonas aeruginosa salicylate adenylation enzyme PchD.
J.Biol.Inorg.Chem. 27 541 551 (2022)
PMID: 35513576 DOI: 10.1007/s00775-022-01941-8

Abstact

Pseudomonas aeruginosa is an increasingly antibiotic-resistant pathogen that causes severe lung infections, burn wound infections, and diabetic foot infections. P. aeruginosa produces the siderophore pyochelin through the use of a non-ribosomal peptide synthetase (NRPS) biosynthetic pathway. Targeting members of siderophore NRPS proteins is one avenue currently under investigation for the development of new antibiotics against antibiotic-resistant organisms. Here, the crystal structure of the pyochelin adenylation domain PchD is reported. The structure was solved to 2.11 Å when co-crystallized with the adenylation inhibitor 5'-O-(N-salicylsulfamoyl)adenosine (salicyl-AMS) and to 1.69 Å with a modified version of salicyl-AMS designed to target an active site cysteine (4-cyano-salicyl-AMS). In the structures, PchD adopts the adenylation conformation, similar to that reported for AB3403 from Acinetobacter baumannii.

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Primary Citation of related structures
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