7TY3 image
Entry Detail
PDB ID:
7TY3
Title:
Crystal Structure of SETD2 Bound to an Indole-based Inhibitor
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-02-11
Release Date:
2022-08-31
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone-lysine N-methyltransferase SETD2
Chain IDs:A
Chain Length:278
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Conformational-Design-Driven Discovery of EZM0414: A Selective, Potent SETD2 Inhibitor for Clinical Studies.
Acs Med.Chem.Lett. 13 1137 1143 (2022)
PMID: 35859865 DOI: 10.1021/acsmedchemlett.2c00167

Abstact

SETD2, a lysine N-methyltransferase, is a histone methyltransferase that plays an important role in various cellular processes and was identified as a target of interest in multiple myeloma that features a t(4,14) translocation. We recently reported the discovery of a novel small-molecule SETD2 inhibitor tool compound that is suitable for preclinical studies. Herein we describe the conformational-design-driven evolution of the advanced chemistry lead, which resulted in compounds appropriate for clinical evaluation. Further optimization of this chemical series led to the discovery of EZM0414, which is a potent, selective, and orally bioavailable inhibitor of SETD2 with good pharmacokinetic properties and robust pharmacodynamic activity in a mouse xenograft model.

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Primary Citation of related structures