7TVW image
Deposition Date 2022-02-06
Release Date 2022-09-28
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7TVW
Keywords:
Title:
Crystal structure of Arabidopsis thaliana DLK2
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.48 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha/beta-Hydrolases superfamily protein
Gene (Uniprot):DLK2
Chain IDs:A
Chain Length:275
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
Crystal structure of Arabidopsis DWARF14-LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture.
Plant Direct 6 e446 e446 (2022)
PMID: 36172078 DOI: 10.1002/pld3.446

Abstact

In Arabidopsis thaliana, the Sigma factor B regulator RsbQ-like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14-LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD14 and AtKAI2 differ in size and architecture of their ligand binding pockets, influencing their substrate specificity. We present the 1.5 Å crystal structure of AtDLK2, revealing the smallest ligand binding pocket in the protein family, bordered by two unique glycine residues. We identified a gatekeeper residue in the protein's lid domain and present a pyrrolo-quinoline-dione compound that inhibits AtDLK2's enzymatic activity.

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Primary Citation of related structures