7TPT image
Entry Detail
PDB ID:
7TPT
EMDB ID:
Title:
Single-particle Cryo-EM structure of Arp2/3 complex at branched-actin junction.
Biological Source:
PDB Version:
Deposition Date:
2022-01-26
Release Date:
2022-05-25
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Actin-related protein 3
Chain IDs:A
Chain Length:7
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2
Chain IDs:B
Chain Length:394
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 1B
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 2
Chain IDs:D
Chain Length:300
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 3
Chain IDs:E
Chain Length:7
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 4
Chain IDs:F
Chain Length:7
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 5
Chain IDs:G
Chain Length:7
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin, alpha skeletal muscle
Chain IDs:H, I, J, K, L, M, N, O, P, Q, R, S, T, U
Chain Length:377
Number of Molecules:14
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Phalloidin
Chain IDs:V (auth: a), W (auth: b), X (auth: c), Y (auth: d), Z (auth: e), AA (auth: f), BA (auth: g), CA (auth: h), DA (auth: i), EA (auth: j), FA (auth: k), GA (auth: l), HA (auth: m), IA (auth: n), JA (auth: o)
Chain Length:7
Number of Molecules:15
Biological Source:Amanita phalloides
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC H HIS modified residue
Peptide-like Molecules
PRD_002366
Primary Citation
Structure of Arp2/3 complex at a branched actin filament junction resolved by single-particle cryo-electron microscopy.
Proc.Natl.Acad.Sci.USA 119 e2202723119 e2202723119 (2022)
PMID: 35622886 DOI: 10.1073/pnas.2202723119

Abstact

Arp2/3 complex nucleates branched actin filaments that provide pushing forces to drive cellular processes such as lamellipodial protrusion and endocytosis. Arp2/3 complex is intrinsically inactive, and multiple classes of nucleation promoting factors (NPFs) stimulate its nucleation activity. When activated by WASP family NPFs, the complex must bind to the side of a preexisting (mother) filament of actin to complete the nucleation process, ensuring that WASP-mediated activation creates branched rather than linear actin filaments. How actin filaments contribute to activation is currently not understood, largely due to the lack of high-resolution structures of activated Arp2/3 complex bound to the side of a filament. Here, we present the 3.9-Å cryo-electron microscopy structure of the Arp2/3 complex at a branch junction. The structure reveals contacts between Arp2/3 complex and the side of the mother actin filament that likely stimulate subunit flattening, a conformational change that allows the actin-related protein subunits in the complex (Arp2 and Arp3) to mimic filamentous actin subunits. In contrast, limited contact between the bottom half of the complex and the mother filament suggests that clamp twisting, a second major conformational change observed in the active state, is not stimulated by actin filaments, potentially explaining why actin filaments are required but insufficient to trigger nucleation during WASP-mediated activation. Along with biochemical and live-cell imaging data and molecular dynamics simulations, the structure reveals features critical for the interaction of Arp2/3 complex with actin filaments and regulated assembly of branched actin filament networks in cells.

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Primary Citation of related structures