7TPR image
Deposition Date 2022-01-25
Release Date 2022-04-20
Last Version Date 2025-05-28
Entry Detail
PDB ID:
7TPR
Title:
Camel nanobodies 7A3 and 8A2 broadly neutralize SARS-CoV-2 variants
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:F817P, A892P, A899P, A942P, K986P, V987P, and residues 682-685 from RRAR to GSAS
Chain IDs:A, B, C
Chain Length:1145
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:Nanobody 8A2
Chain IDs:D, E
Chain Length:132
Number of Molecules:2
Biological Source:Camelus dromedarius
Polymer Type:polypeptide(L)
Molecule:Nanobody 7A3
Chain IDs:F, G, H
Chain Length:125
Number of Molecules:3
Biological Source:Camelus dromedarius
Ligand Molecules
Primary Citation
Camel nanobodies broadly neutralize SARS-CoV-2 variants
bioRxiv ? ? ? (2021)
PMID: 34751270 DOI: 10.1101/2021.10.27.465996

Abstact

UNLABELLED With the emergence of SARS-CoV-2 variants, there is urgent need to develop broadly neutralizing antibodies. Here, we isolate two V H H nanobodies (7A3 and 8A2) from dromedary camels by phage display, which have high affinity for the receptor-binding domain (RBD) and broad neutralization activities against SARS-CoV-2 and its emerging variants. Cryo-EM complex structures reveal that 8A2 binds the RBD in its up mode and 7A3 inhibits receptor binding by uniquely targeting a highly conserved and deeply buried site in the spike regardless of the RBD conformational state. 7A3 at a dose of ≥5 mg/kg efficiently protects K18-hACE2 transgenic mice from the lethal challenge of B.1.351 or B.1.617.2, suggesting that the nanobody has promising therapeutic potentials to curb the COVID-19 surge with emerging SARS-CoV-2 variants. ONE-SENTENCE SUMMARY Dromedary camel (Camelus dromedarius) V H H phage libraries were built for isolation of the nanobodies that broadly neutralize SARS-CoV-2 variants.

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Primary Citation of related structures