7TOS image
Entry Detail
PDB ID:
7TOS
EMDB ID:
Keywords:
Title:
E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-01-24
Release Date:
2022-05-25
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:16S ribosomal RNA
Chain IDs:AB (auth: 16S)
Chain Length:1539
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:BB (auth: 23S)
Chain Length:2903
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:CB (auth: 5S)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:A (auth: L02)
Chain Length:271
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:B (auth: L03)
Chain Length:209
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:C (auth: L04)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:D (auth: L05)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:E (auth: L06)
Chain Length:176
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:F (auth: L09)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L1
Chain IDs:ZA (auth: L1)
Chain Length:223
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L10
Chain IDs:G (auth: L10)
Chain Length:131
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L11
Chain IDs:H (auth: L11)
Chain Length:141
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:I (auth: L13)
Chain Length:142
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:J (auth: L14)
Chain Length:122
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:K (auth: L15)
Chain Length:143
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:L (auth: L16)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:M (auth: L17)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:N (auth: L18)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:O (auth: L19)
Chain Length:114
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:P (auth: L20)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Ribosomal protein L21
Chain IDs:Q (auth: L21)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:R (auth: L22)
Chain Length:110
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:S (auth: L23)
Chain Length:93
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Ribosomal protein L24
Chain IDs:T (auth: L24)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:U (auth: L25)
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:V (auth: L27)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:W (auth: L28)
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:X (auth: L29)
Chain Length:63
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:Y (auth: L30)
Chain Length:58
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:Z (auth: L31)
Chain Length:66
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:AA (auth: L32)
Chain Length:56
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:BA (auth: L33)
Chain Length:50
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:CA (auth: L34)
Chain Length:46
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:DA (auth: L35)
Chain Length:64
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:EA (auth: L36)
Chain Length:38
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:PR20, ALS/FTD dipeptide repeat protein
Chain IDs:DB (auth: PR)
Chain Length:40
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:FA (auth: S02)
Chain Length:225
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S3
Chain IDs:GA (auth: S03)
Chain Length:206
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:HA (auth: S04)
Chain Length:205
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:IA (auth: S05)
Chain Length:157
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6, non-modified isoform
Chain IDs:JA (auth: S06)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S7
Chain IDs:KA (auth: S07)
Chain Length:151
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:LA (auth: S08)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S9
Chain IDs:MA (auth: S09)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S10
Chain IDs:NA (auth: S10)
Chain Length:98
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:OA (auth: S11)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:PA (auth: S12)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S13
Chain IDs:QA (auth: S13)
Chain Length:114
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S14
Chain IDs:RA (auth: S14)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:SA (auth: S15)
Chain Length:88
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:TA (auth: S16)
Chain Length:82
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:UA (auth: S17)
Chain Length:80
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:VA (auth: S18)
Chain Length:65
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:WA (auth: S19)
Chain Length:79
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:XA (auth: S20)
Chain Length:85
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Ribosomal protein S21
Chain IDs:YA (auth: S21)
Chain Length:65
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM.
Nat Commun 13 2776 2776 (2022)
PMID: 35589706 DOI: 10.1038/s41467-022-30418-0

Abstact

Toxic dipeptide-repeat (DPR) proteins are produced from expanded G4C2 repeats in the C9ORF72 gene, the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Two DPR proteins, poly-PR and poly-GR, repress cellular translation but the molecular mechanism remains unknown. Here we show that poly-PR and poly-GR of ≥20 repeats inhibit the ribosome's peptidyl-transferase activity at nanomolar concentrations, comparable to specific translation inhibitors. High-resolution cryogenic electron microscopy (cryo-EM) reveals that poly-PR and poly-GR block the polypeptide tunnel of the ribosome, extending into the peptidyl-transferase center (PTC). Consistent with these findings, the macrolide erythromycin, which binds in the tunnel, competes with poly-PR and restores peptidyl-transferase activity. Our results demonstrate that strong and specific binding of poly-PR and poly-GR in the ribosomal tunnel blocks translation, revealing the structural basis of their toxicity in C9ORF72-ALS/FTD.

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Protein

Chemical

Disease

Primary Citation of related structures