7TOQ image
Entry Detail
PDB ID:
7TOQ
EMDB ID:
Keywords:
Title:
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
Biological Source:
PDB Version:
Deposition Date:
2022-01-24
Release Date:
2022-05-25
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:18S rRNA
Chain IDs:A (auth: A18S)
Chain Length:1698
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:28S rRNA
Chain IDs:B (auth: A25S)
Chain Length:3649
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:5.8S rRNA
Chain IDs:C (auth: A58S)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:5S rRNA
Chain IDs:D (auth: A5S)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL2
Chain IDs:E (auth: AL02)
Chain Length:244
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3
Chain IDs:F (auth: AL03)
Chain Length:394
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4
Chain IDs:G (auth: AL04)
Chain Length:362
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L5
Chain IDs:H (auth: AL05)
Chain Length:293
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:I (auth: AL06)
Chain Length:251
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL30
Chain IDs:J (auth: AL07)
Chain Length:225
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL8
Chain IDs:K (auth: AL08)
Chain Length:241
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L9
Chain IDs:L (auth: AL09)
Chain Length:190
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L10
Chain IDs:M (auth: AL10)
Chain Length:213
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11
Chain IDs:N (auth: AL11)
Chain Length:169
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L12
Chain IDs:O (auth: AL12)
Chain Length:163
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL13
Chain IDs:P (auth: AL13)
Chain Length:210
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14
Chain IDs:Q (auth: AL14)
Chain Length:138
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L15
Chain IDs:R (auth: AL15)
Chain Length:203
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL13
Chain IDs:S (auth: AL16)
Chain Length:199
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L17
Chain IDs:T (auth: AL17)
Chain Length:153
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL18
Chain IDs:U (auth: AL18)
Chain Length:187
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19
Chain IDs:V (auth: AL19)
Chain Length:180
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL20
Chain IDs:W (auth: AL20)
Chain Length:175
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L21
Chain IDs:X (auth: AL21)
Chain Length:159
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL22
Chain IDs:Y (auth: AL22)
Chain Length:99
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23
Chain IDs:Z (auth: AL23)
Chain Length:131
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L24
Chain IDs:AA (auth: AL24)
Chain Length:63
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL23
Chain IDs:BA (auth: AL25)
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26
Chain IDs:CA (auth: AL26)
Chain Length:134
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:DA (auth: AL27)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27a
Chain IDs:EA (auth: AL28)
Chain Length:147
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL29
Chain IDs:FA (auth: AL29)
Chain Length:103
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL30
Chain IDs:GA (auth: AL30)
Chain Length:94
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31
Chain IDs:HA (auth: AL31)
Chain Length:107
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:IA (auth: AL32)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35a
Chain IDs:JA (auth: AL33)
Chain Length:109
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L34
Chain IDs:KA (auth: AL34)
Chain Length:114
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35
Chain IDs:LA (auth: AL35)
Chain Length:122
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:MA (auth: AL36)
Chain Length:102
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37
Chain IDs:NA (auth: AL37)
Chain Length:86
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL38
Chain IDs:OA (auth: AL38)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL39
Chain IDs:PA (auth: AL39)
Chain Length:50
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL40
Chain IDs:QA (auth: AL40)
Chain Length:52
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL41
Chain IDs:RA (auth: AL41)
Chain Length:23
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL42
Chain IDs:SA (auth: AL42)
Chain Length:104
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37a
Chain IDs:TA (auth: AL43)
Chain Length:91
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S acidic ribosomal protein P0
Chain IDs:UA (auth: ALP0)
Chain Length:27
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Receptor of activated protein C kinase 1
Chain IDs:VA (auth: ARAC)
Chain Length:313
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S_SA_C domain-containing protein
Chain IDs:WA (auth: AS00)
Chain Length:217
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3a
Chain IDs:XA (auth: AS01)
Chain Length:213
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S2
Chain IDs:YA (auth: AS02)
Chain Length:221
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3
Chain IDs:ZA (auth: AS03)
Chain Length:228
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:AB (auth: AS04)
Chain Length:262
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein S5
Chain IDs:BB (auth: AS05)
Chain Length:191
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:CB (auth: AS06)
Chain Length:237
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eS7
Chain IDs:DB (auth: AS07)
Chain Length:189
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:EB (auth: AS08)
Chain Length:206
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S9
Chain IDs:FB (auth: AS09)
Chain Length:185
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S10
Chain IDs:GB (auth: AS10)
Chain Length:96
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11
Chain IDs:HB (auth: AS11)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:IB (auth: AS12)
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13
Chain IDs:JB (auth: AS13)
Chain Length:149
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S14
Chain IDs:KB (auth: AS14)
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15
Chain IDs:LB (auth: AS15)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uS9
Chain IDs:MB (auth: AS16)
Chain Length:142
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S17
Chain IDs:NB (auth: AS17)
Chain Length:132
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S18
Chain IDs:OB (auth: AS18)
Chain Length:144
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eS19
Chain IDs:PB (auth: AS19)
Chain Length:141
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S20
Chain IDs:QB (auth: AS20)
Chain Length:100
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eS21
Chain IDs:RB (auth: AS21)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15a
Chain IDs:SB (auth: AS22)
Chain Length:129
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S23
Chain IDs:TB (auth: AS23)
Chain Length:141
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24
Chain IDs:UB (auth: AS24)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:VB (auth: AS25)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eS26
Chain IDs:WB (auth: AS26)
Chain Length:101
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27
Chain IDs:XB (auth: AS27)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S28
Chain IDs:YB (auth: AS28)
Chain Length:62
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S29
Chain IDs:ZB (auth: AS29)
Chain Length:55
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30
Chain IDs:AC (auth: AS30)
Chain Length:55
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27a
Chain IDs:BC (auth: AS31)
Chain Length:68
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28
Chain IDs:CC (auth: EL28)
Chain Length:125
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
Chain IDs:DC (auth: MRNA)
Chain Length:10
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:PR20, ALS/FTD dipeptide repeat protein
Chain IDs:EC (auth: PR)
Chain Length:40
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:tRNAfMet
Chain IDs:FC (auth: PTRN)
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli K-12
Ligand Molecules
Primary Citation
Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM.
Nat Commun 13 2776 2776 (2022)
PMID: 35589706 DOI: 10.1038/s41467-022-30418-0

Abstact

Toxic dipeptide-repeat (DPR) proteins are produced from expanded G4C2 repeats in the C9ORF72 gene, the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Two DPR proteins, poly-PR and poly-GR, repress cellular translation but the molecular mechanism remains unknown. Here we show that poly-PR and poly-GR of ≥20 repeats inhibit the ribosome's peptidyl-transferase activity at nanomolar concentrations, comparable to specific translation inhibitors. High-resolution cryogenic electron microscopy (cryo-EM) reveals that poly-PR and poly-GR block the polypeptide tunnel of the ribosome, extending into the peptidyl-transferase center (PTC). Consistent with these findings, the macrolide erythromycin, which binds in the tunnel, competes with poly-PR and restores peptidyl-transferase activity. Our results demonstrate that strong and specific binding of poly-PR and poly-GR in the ribosomal tunnel blocks translation, revealing the structural basis of their toxicity in C9ORF72-ALS/FTD.

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Protein

Chemical

Disease

Primary Citation of related structures