7TNQ image
Deposition Date 2022-01-21
Release Date 2022-06-22
Last Version Date 2024-10-09
Entry Detail
PDB ID:
7TNQ
Keywords:
Title:
The symmetry-released subpellicular microtubule map from detergent-extracted Toxoplasma cells
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
8.40 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Microtubule associated protein SPM1
Gene (Uniprot):SPM1
Chain IDs:A (auth: 0), B (auth: 1), C (auth: 10), D (auth: 11), E (auth: 12), F (auth: 13), G (auth: 14), H (auth: 15), I (auth: 16), J (auth: 17), K (auth: 18), L (auth: 19), M (auth: 2), N (auth: 20), O (auth: 21), P (auth: 22), Q (auth: 23), R (auth: 3), S (auth: 4), T (auth: 5), U (auth: 6), V (auth: 7), W (auth: 8), X (auth: 9)
Chain Length:351
Number of Molecules:24
Biological Source:Toxoplasma gondii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha chain
Chain IDs:Y (auth: A0), AA (auth: A2), CA (auth: A4), EA (auth: A6), GA (auth: A8), IA (auth: B0), KA (auth: B2), MA (auth: B4), OA (auth: B6), QA (auth: B8), SA (auth: C0), UA (auth: C2), WA (auth: C4), YA (auth: C6), AB (auth: C8), CB (auth: D0), EB (auth: D2), GB (auth: D4), IB (auth: D6), KB (auth: D8), MB (auth: E0), OB (auth: E2), QB (auth: E4), SB (auth: E6), UB (auth: E8), WB (auth: F0)
Chain Length:453
Number of Molecules:26
Biological Source:Toxoplasma gondii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):TGME49_266960
Chain IDs:Z (auth: A1), BA (auth: A3), DA (auth: A5), FA (auth: A7), HA (auth: A9), JA (auth: B1), LA (auth: B3), NA (auth: B5), PA (auth: B7), RA (auth: B9), TA (auth: C1), VA (auth: C3), XA (auth: C5), ZA (auth: C7), BB (auth: C9), DB (auth: D1), FB (auth: D3), HB (auth: D5), JB (auth: D7), LB (auth: D9), NB (auth: E1), PB (auth: E3), RB (auth: E5), TB (auth: E7), VB (auth: E9), XB (auth: F1)
Chain Length:449
Number of Molecules:26
Biological Source:Toxoplasma gondii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PDI family protein
Gene (Uniprot):TGME49_232410
Chain IDs:YB (auth: a), ZB (auth: b), AC (auth: c), BC (auth: d), CC (auth: e), DC (auth: f), EC (auth: g), FC (auth: h), GC (auth: i), HC (auth: j), KC (auth: m), LC (auth: n), MC (auth: o), NC (auth: p), OC (auth: q), PC (auth: r), QC (auth: s), RC (auth: t), SC (auth: u), TC (auth: v)
Chain Length:220
Number of Molecules:20
Biological Source:Toxoplasma gondii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PDI family protein
Gene (Uniprot):TGME49_225790
Chain IDs:IC (auth: k), JC (auth: l), UC (auth: w), VC (auth: x)
Chain Length:189
Number of Molecules:4
Biological Source:Toxoplasma gondii
Ligand Molecules
Primary Citation
Cryo-ET of Toxoplasma parasites gives subnanometer insight into tubulin-based structures.
Proc.Natl.Acad.Sci.USA 119 ? ? (2022)
PMID: 35121661 DOI: 10.1073/pnas.2111661119

Abstact

Tubulin is a conserved protein that polymerizes into different forms of filamentous structures in Toxoplasma gondii, an obligate intracellular parasite in the phylum Apicomplexa. Two key tubulin-containing cytoskeletal components are subpellicular microtubules (SPMTs) and conoid fibrils (CFs). The SPMTs help maintain shape and gliding motility, while the CFs are implicated in invasion. Here, we use cryogenic electron tomography to determine the molecular structures of the SPMTs and CFs in vitrified intact and detergent-extracted parasites. Subvolume densities from detergent-extracted parasites yielded averaged density maps at subnanometer resolutions, and these were related back to their architecture in situ. An intralumenal spiral lines the interior of the 13-protofilament SPMTs, revealing a preferred orientation of these microtubules relative to the parasite's long axis. Each CF is composed of nine tubulin protofilaments that display a comma-shaped cross-section, plus additional associated components. Conoid protrusion, a crucial step in invasion, is associated with an altered pitch of each CF. The use of basic building blocks of protofilaments and different accessory proteins in one organism illustrates the versatility of tubulin to form two distinct types of assemblies, SPMTs and CFs.

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