7TI2 image
Entry Detail
PDB ID:
7TI2
Keywords:
Title:
Structure of KPC-2 bound to RPX-7063 at 1.75A
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-01-12
Release Date:
2022-10-12
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Carbapenem-hydrolyzing beta-lactamase KPC
Chain IDs:A
Chain Length:277
Number of Molecules:1
Biological Source:Klebsiella pneumoniae
Primary Citation
Broad-spectrum cyclic boronate beta-lactamase inhibitors featuring an intramolecular prodrug for oral bioavailability.
Bioorg.Med.Chem. 62 116722 116722 (2022)
PMID: 35358864 DOI: 10.1016/j.bmc.2022.116722

Abstact

Early efforts to broaden the spectrum and potency of cyclic boronic acid β-lactamase inhibitor vaborbactam included a series of 7-membered ring boronates. Exploration of stereoisomers and incorporation of heteroatoms allowed identification of the all-carbon cyclic boronate with substituents trans as the preferred core structure, showing inhibition of Class A and C enzymes. Crystal structures of one analog bound to important β-lactamase enzymes were obtained. When isolated under acidic conditions, these compounds spontaneously formed a neutral cyclic anhydride (intramolecular prodrug) which was shown to have much-improved oral bioavailability (52-69%) compared to the ring-opened carboxylate salt (9%).

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Primary Citation of related structures