7TGH image
Entry Detail
PDB ID:
7TGH
EMDB ID:
Title:
Cryo-EM structure of respiratory super-complex CI+III2 from Tetrahymena thermophila
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-01-07
Release Date:
2022-04-06
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 1
Chain IDs:A (auth: 1)
Chain Length:284
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 1
Chain IDs:B (auth: 1B)
Chain Length:59
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Ymf65
Chain IDs:C (auth: 2)
Chain Length:360
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 2
Chain IDs:D (auth: 2B)
Chain Length:178
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 3
Chain IDs:E (auth: 3)
Chain Length:121
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:M16 family peptidase, putative
Chain IDs:F (auth: 3A), Q (auth: 3a)
Chain Length:482
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Peptidase M16 inactive domain protein
Chain IDs:G (auth: 3B), R (auth: 3b)
Chain Length:513
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Apocytochrome b
Chain IDs:H (auth: 3C), S (auth: 3c)
Chain Length:426
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Cytochrome protein c1
Chain IDs:I (auth: 3D), T (auth: 3d)
Chain Length:319
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Rieske iron-sulfur protein, ubiquinol-cytochrome C reductase iron-sulfur subunit
Chain IDs:J (auth: 3E), U (auth: 3e)
Chain Length:269
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Ubiquinol-cytochrome C reductase hinge protein
Chain IDs:K (auth: 3F), V (auth: 3f)
Chain Length:90
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:UQCRB
Chain IDs:L (auth: 3G), W (auth: 3g)
Chain Length:328
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:M (auth: 3H), X (auth: 3h)
Chain Length:130
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:N (auth: 3I), Y (auth: 3i)
Chain Length:119
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:O (auth: 3J), Z (auth: 3j)
Chain Length:62
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:UNK1
Chain IDs:P (auth: 3M)
Chain Length:17
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:UNK2
Chain IDs:AA (auth: 3l)
Chain Length:24
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:UNK3
Chain IDs:BA (auth: 3m)
Chain Length:17
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 4
Chain IDs:CA (auth: 4)
Chain Length:505
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Ymf58
Chain IDs:DA (auth: 4L)
Chain Length:116
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 5
Chain IDs:EA (auth: 5)
Chain Length:750
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Ymf57
Chain IDs:FA (auth: 5B)
Chain Length:100
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Ymf62
Chain IDs:GA (auth: 6)
Chain Length:255
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUA1
Chain IDs:CB (auth: A1)
Chain Length:94
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Ribosomal protein L51/S25/CI-B8 domain protein
Chain IDs:HA (auth: A2)
Chain Length:103
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:JC (auth: A3)
Chain Length:135
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:ETC complex I subunit motif protein
Chain IDs:IA (auth: A5)
Chain Length:206
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase, putative
Chain IDs:JA (auth: A6)
Chain Length:172
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUA7
Chain IDs:KA (auth: A7)
Chain Length:282
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUA8
Chain IDs:QB (auth: A8)
Chain Length:238
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NAD-dependent epimerase/dehydratase family protein
Chain IDs:LA (auth: A9)
Chain Length:362
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Acyl carrier protein
Chain IDs:MA (auth: AB)
Chain Length:138
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Acyl carrier protein
Chain IDs:NA (auth: AC)
Chain Length:133
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Chain IDs:OA (auth: AL)
Chain Length:194
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUA13
Chain IDs:PA (auth: AM)
Chain Length:175
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:XB (auth: AN)
Chain Length:231
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB2
Chain IDs:BC (auth: B2)
Chain Length:126
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:EC (auth: B3)
Chain Length:83
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB4
Chain IDs:YB (auth: B4)
Chain Length:108
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB6
Chain IDs:UB (auth: B6)
Chain Length:129
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB7
Chain IDs:QA (auth: B7)
Chain Length:120
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB8
Chain IDs:RA (auth: B8)
Chain Length:207
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB9
Chain IDs:OB (auth: B9)
Chain Length:189
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUB10
Chain IDs:SA (auth: BL)
Chain Length:188
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:VB (auth: BM)
Chain Length:214
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:UNK4
Chain IDs:TA (auth: C)
Chain Length:209
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Gamma-carbonic anhydrase
Chain IDs:UA (auth: C1)
Chain Length:257
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Gamma-carbonic anhydrase
Chain IDs:VA (auth: C2)
Chain Length:233
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transcription factor apfi protein, putative
Chain IDs:WA (auth: C3)
Chain Length:346
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUC2
Chain IDs:WB (auth: C4)
Chain Length:102
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:2 iron, 2 sulfur cluster-binding protein
Chain IDs:ZA (auth: FX)
Chain Length:172
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:DnaJ domain protein
Chain IDs:YA (auth: J1)
Chain Length:317
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:DC (auth: P1)
Chain Length:251
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUPH2
Chain IDs:IC (auth: P2)
Chain Length:189
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:UNK5
Chain IDs:GB (auth: R)
Chain Length:124
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase 75 kDa subunit
Chain IDs:HB (auth: S1)
Chain Length:718
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 7
Chain IDs:IB (auth: S2)
Chain Length:442
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 9
Chain IDs:JB (auth: S3)
Chain Length:198
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Chain IDs:KB (auth: S4)
Chain Length:185
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:GRAM domain protein
Chain IDs:GC (auth: S5)
Chain Length:94
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Zinc-finger protein
Chain IDs:LB (auth: S6)
Chain Length:132
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 10
Chain IDs:MB (auth: S7)
Chain Length:162
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase 1, chain, putative
Chain IDs:NB (auth: S8)
Chain Length:236
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Lipid-A-disaccharide synthase
Chain IDs:BB (auth: T1)
Chain Length:516
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
Chain IDs:AB (auth: T2)
Chain Length:333
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT3
Chain IDs:CC (auth: T3)
Chain Length:311
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT4
Chain IDs:ZB (auth: T4)
Chain Length:212
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:FB (auth: T5)
Chain Length:205
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT6
Chain IDs:EB (auth: T6)
Chain Length:144
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:MC (auth: T7)
Chain Length:143
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT8
Chain IDs:AC (auth: T8)
Chain Length:135
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT9
Chain IDs:KC (auth: T9)
Chain Length:135
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT10
Chain IDs:FC (auth: TA)
Chain Length:102
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:RB (auth: TB)
Chain Length:113
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NDUTT12
Chain IDs:HC (auth: TC)
Chain Length:93
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:XA (auth: TD)
Chain Length:73
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Transmembrane protein, putative
Chain IDs:LC (auth: TE)
Chain Length:71
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:Thioredoxin
Chain IDs:PB (auth: TX)
Chain Length:166
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Chain IDs:SB (auth: V1)
Chain Length:474
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase 24 kDa subunit
Chain IDs:TB (auth: V2)
Chain Length:274
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
Chain IDs:DB (auth: X1)
Chain Length:150
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Primary Citation
Structures of Tetrahymena 's respiratory chain reveal the diversity of eukaryotic core metabolism.
Science 376 831 839 (2022)
PMID: 35357889 DOI: 10.1126/science.abn7747

Abstact

Respiration is a core biological energy-converting process whose last steps are carried out by a chain of multisubunit complexes in the inner mitochondrial membrane. To probe the functional and structural diversity of eukaryotic respiration, we examined the respiratory chain of the ciliate Tetrahymena thermophila (Tt). Using cryo-electron microscopy on a mixed sample, we solved structures of a supercomplex between Tt complex I (Tt-CI) and Tt-CIII2 (Tt-SC I+III2) and a structure of Tt-CIV2. Tt-SC I+III2 (~2.3 megadaltons) is a curved assembly with structural and functional symmetry breaking. Tt-CIV2 is a ~2.7-megadalton dimer with more than 50 subunits per protomer, including mitochondrial carriers and a TIM83-TIM133-like domain. Our structural and functional study of the T. thermophila respiratory chain reveals divergence in key components of eukaryotic respiration, thereby expanding our understanding of core metabolism.

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Primary Citation of related structures