7TFN image
Deposition Date 2022-01-06
Release Date 2022-01-19
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7TFN
Title:
Cryo-EM structure of CD4bs antibody Ab1303 in complex with HIV-1 Env trimer BG505 SOSIP.664
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein BG505 SOSIP.664 - gp120
Chain IDs:A, B, C
Chain Length:481
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Anti-HIV-1 CD4bs antibody Fab Ab1303 - Heavy chain
Chain IDs:D (auth: H), E (auth: I), H (auth: P)
Chain Length:235
Number of Molecules:3
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:CD4 binding site antibody Fab Ab1303 - light chain
Chain IDs:F (auth: J), G (auth: L), I (auth: Q)
Chain Length:217
Number of Molecules:3
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein BG505 SOSIP.664 - gp41
Gene (Uniprot):env
Chain IDs:J (auth: X), K (auth: Y), L (auth: Z)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Primary Citation
Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer.
Nat Commun 13 732 732 (2022)
PMID: 35136084 DOI: 10.1038/s41467-022-28424-3

Abstact

Broadly-neutralizing antibodies (bNAbs) against HIV-1 Env can protect from infection. We characterize Ab1303 and Ab1573, heterologously-neutralizing CD4-binding site (CD4bs) antibodies, isolated from sequentially-immunized macaques. Ab1303/Ab1573 binding is observed only when Env trimers are not constrained in the closed, prefusion conformation. Fab-Env cryo-EM structures show that both antibodies recognize the CD4bs on Env trimer with an 'occluded-open' conformation between closed, as targeted by bNAbs, and fully-open, as recognized by CD4. The occluded-open Env trimer conformation includes outwardly-rotated gp120 subunits, but unlike CD4-bound Envs, does not exhibit V1V2 displacement, 4-stranded gp120 bridging sheet, or co-receptor binding site exposure. Inter-protomer distances within trimers measured by double electron-electron resonance spectroscopy suggest an equilibrium between occluded-open and closed Env conformations, consistent with Ab1303/Ab1573 binding stabilizing an existing conformation. Studies of Ab1303/Ab1573 demonstrate that CD4bs neutralizing antibodies that bind open Env trimers can be raised by immunization, thereby informing immunogen design and antibody therapeutic efforts.

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