7TCL image
Entry Detail
PDB ID:
7TCL
Keywords:
Title:
Crystal structure of P.IsnB complexed with tyrosine isonitrile
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-12-26
Release Date:
2022-08-31
Method Details:
Experimental Method:
Resolution:
1.97 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TauD/TfdA family dioxygenase
Chain IDs:A (auth: X)
Chain Length:281
Number of Molecules:1
Biological Source:Photorhabdus
Primary Citation
Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate.
Nat Commun 13 5343 5343 (2022)
PMID: 36097268 DOI: 10.1038/s41467-022-32870-4

Abstact

Two different types of desaturations are employed by iron- and 2-oxoglutarate-dependent (Fe/2OG) enzymes to construct vinyl isonitrile and isocyanoacrylate moieties found in isonitrile-containing natural products. A substrate-bound protein structure reveals a plausible strategy to affect desaturation and hints at substrate promiscuity of these enzymes. Analogs are synthesized and used as mechanistic probes to validate structural observations. Instead of proceeding through hydroxylated intermediate as previously proposed, a plausible carbocation species is utilized to trigger C=C bond installation. These Fe/2OG enzymes can also accommodate analogs with opposite chirality and different functional groups including isonitrile-(D)-tyrosine, N-formyl tyrosine, and phloretic acid, while maintaining the reaction selectivity.

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