7TAK image
Entry Detail
PDB ID:
7TAK
Title:
Structure of a NAT transporter
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-12-21
Release Date:
2023-01-25
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative membrane protein PurT
Chain IDs:A, B
Chain Length:471
Number of Molecules:2
Biological Source:Colwellia psychrerythraea
Ligand Molecules
Primary Citation
Insight into the mechanism of H + -coupled nucleobase transport.
Proc.Natl.Acad.Sci.USA 120 e2302799120 e2302799120 (2023)
PMID: 37549264 DOI: 10.1073/pnas.2302799120

Abstact

Members of the nucleobase/ascorbic acid transporter (NAT) gene family are found in all kingdoms of life. In mammals, the concentrative uptake of ascorbic acid (vitamin C) by members of the NAT family is driven by the Na+ gradient, while the uptake of nucleobases in bacteria is powered by the H+ gradient. Here, we report the structure and function of PurTCp, a NAT family member from Colwellia psychrerythraea. The structure of PurTCp was determined to 2.80 Å resolution by X-ray crystallography. PurTCp forms a homodimer, and each protomer has 14 transmembrane segments folded into a transport domain (core domain) and a scaffold domain (gate domain). A purine base is present in the structure and defines the location of the substrate binding site. Functional studies reveal that PurTCp transports purines but not pyrimidines and that purine binding and transport is dependent on the pH. Mutation of a conserved aspartate residue close to the substrate binding site reveals the critical role of this residue in H+-dependent transport of purines. Comparison of the PurTCp structure with transporters of the same structural fold suggests that rigid-body motions of the substrate-binding domain are central for substrate translocation across the membrane.

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Primary Citation of related structures