7T9R image
Entry Detail
PDB ID:
7T9R
Title:
Crystal structure of Crocodile defensin CpoBD13:phosphatidic acid complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-12-19
Release Date:
2023-01-18
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CpoBD13
Chain IDs:A, B, C, D
Chain Length:38
Number of Molecules:4
Biological Source:Crocodylus porosus
Primary Citation
Crocodile defensin (CpoBD13) antifungal activity via pH-dependent phospholipid targeting and membrane disruption.
Nat Commun 14 1170 1170 (2023)
PMID: 36859344 DOI: 10.1038/s41467-023-36280-y

Abstact

Crocodilians are an order of ancient reptiles that thrive in pathogen-rich environments. The ability to inhabit these harsh environments is indicative of a resilient innate immune system. Defensins, a family of cysteine-rich cationic host defence peptides, are a major component of the innate immune systems of all plant and animal species, however crocodilian defensins are poorly characterised. We now show that the saltwater crocodile defensin CpoBD13 harbors potent antifungal activity that is mediated by a pH-dependent membrane-targeting action. CpoBD13 binds the phospholipid phosphatidic acid (PA) to form a large helical oligomeric complex, with specific histidine residues mediating PA binding. The utilisation of histidine residues for PA engagement allows CpoBD13 to exhibit differential activity at a range of environmental pH values, where CpoBD13 is optimally active in an acidic environment.

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