7T8I image
Deposition Date 2021-12-16
Release Date 2022-03-16
Last Version Date 2024-04-03
Entry Detail
PDB ID:
7T8I
Title:
Crystal structure of the ImmR transcriptional regulator DNA-binding domain of Bacillus subtilis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.34
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
I 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phage element (ICEBs1)transcriptional regulator (Xre family)
Chain IDs:A
Chain Length:66
Number of Molecules:1
Biological Source:Bacillus subtilis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phage element (ICEBs1)transcriptional regulator (Xre family)
Chain IDs:B
Chain Length:66
Number of Molecules:1
Biological Source:Bacillus subtilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLZ A LYS modified residue
Primary Citation
Crystal structure report of the ImmR transcriptional regulator DNA-binding domain of the Bacillus subtilis ICEBs1 transposon.
Sci Rep 12 5258 5258 (2022)
PMID: 35347179 DOI: 10.1038/s41598-022-09237-2

Abstact

Bacillus subtilis is a commensal member of the human oral and gut microbiomes, which can become infectious to immunocompromised patients. It possesses a conjugative transposon, ICEBs1, which includes > 20 genes and can be passed by horizontal gene transfer to other bacteria, including pathogenic Bacillus anthracis and Listeria monocytogenes. ICEBs1 is regulated by the ImmR/ImmA tandem, which are a transcriptional repressor that constitutively blocks transcription and a metallopeptidase that acts as anti-repressor and inactivates ImmR by proteolytic cleavage. We here report the production and purification of 127-residue ImmR from ICEBs1 and the crystal structure of its DNA-binding domain. It features a five-helix bundle centred on a helix-turn-helix motif potentially binding the major grove of double-stranded target DNA. ImmR shows structural and mechanistic similarity with the B. subtilis SinR repressor, which is engaged in sporulation inhibition.

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