7T5Q image
Entry Detail
PDB ID:
7T5Q
EMDB ID:
Title:
Cryo-EM Structure of a Transition State of Arp2/3 Complex Activation
Biological Source:
PDB Version:
Deposition Date:
2021-12-13
Release Date:
2023-06-14
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Actin-related protein 3
Chain IDs:A
Chain Length:418
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2
Chain IDs:B
Chain Length:394
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 1A
Chain IDs:C
Chain Length:370
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 2
Chain IDs:D
Chain Length:300
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 3
Chain IDs:E
Chain Length:178
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 4
Chain IDs:F
Chain Length:168
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin-related protein 2/3 complex subunit 5
Chain IDs:G
Chain Length:151
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Actin, alpha skeletal muscle
Chain IDs:H
Chain Length:375
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:F-actin-capping protein subunit alpha-1/Actin nucleation-promoting factor WASL chimera
Chain IDs:I
Chain Length:346
Number of Molecules:1
Biological Source:Homo sapiens, Mus musculus
Polymer Type:polypeptide(L)
Description:F-actin-capping protein subunit beta/Actin nucleation-promoting factor WASL chimera
Chain IDs:J
Chain Length:333
Number of Molecules:1
Biological Source:Homo sapiens, Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC H HIS modified residue
Primary Citation
Transition State of Arp2/3 Complex Activation by Actin-Bound Dimeric Nucleation-Promoting Factor.
Proc.Natl.Acad.Sci.USA 120 e2306165120 e2306165120 (2023)
PMID: 37549294 DOI: 10.1073/pnas.2306165120

Abstact

Arp2/3 complex generates branched actin networks that drive fundamental processes such as cell motility and cytokinesis. The complex comprises seven proteins, including actin-related proteins (Arps) 2 and 3 and five scaffolding proteins (ArpC1-ArpC5) that mediate interactions with a pre-existing (mother) actin filament at the branch junction. Arp2/3 complex exists in two main conformations, inactive with the Arps interacting end-to-end and active with the Arps interacting side-by-side like subunits of the short-pitch helix of the actin filament. Several cofactors drive the transition toward the active state, including ATP binding to the Arps, WASP-family nucleation-promoting factors (NPFs), actin monomers, and binding of Arp2/3 complex to the mother filament. The precise contribution of each cofactor to activation is poorly understood. We report the 3.32-Å resolution cryo-electron microscopy structure of a transition state of Arp2/3 complex activation with bound constitutively dimeric NPF. Arp2/3 complex-binding region of the NPF N-WASP was fused C-terminally to the α and β subunits of the CapZ heterodimer. One arm of the NPF dimer binds Arp2 and the other binds actin and Arp3. The conformation of the complex is intermediate between those of inactive and active Arp2/3 complex. Arp2, Arp3, and actin also adopt intermediate conformations between monomeric (G-actin) and filamentous (F-actin) states, but only actin hydrolyzes ATP. In solution, the transition complex is kinetically shifted toward the short-pitch conformation and has higher affinity for F-actin than inactive Arp2/3 complex. The results reveal how all the activating cofactors contribute in a coordinated manner toward Arp2/3 complex activation.

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