7T2S image
Entry Detail
PDB ID:
7T2S
Title:
Structure of E. coli upec-117 Cap18 3'-5' exonuclease
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-12-06
Release Date:
2022-07-20
Method Details:
Experimental Method:
Resolution:
1.82 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:3'-5' exonuclease
Chain IDs:A
Chain Length:187
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structure and activity of a bacterial defense-associated 3'-5' exonuclease.
Protein Sci. 31 e4374 e4374 (2022)
PMID: 35762727 DOI: 10.1002/pro.4374

Abstact

The widespread CBASS (cyclic oligonucleotide-based anti-phage signaling system) immune systems in bacteria protect their hosts from bacteriophage infection by triggering programmed cell death. CBASS systems all encode a cyclic oligonucleotide synthase related to eukaryotic cGAS but use diverse regulators and effector proteins including nucleases, phospholipases, and membrane-disrupting proteins to effect cell death. Cap18 is a predicted 3'-5' exonuclease associated with hundreds of CBASS systems, whose structure, biochemical activities, and biological roles remain unknown. Here we show that Cap18 is a DEDDh-family exonuclease related to the bacterial exonucleases RNase T and Orn and has nonspecific 3'-5' DNA exonuclease activity. Cap18 is commonly found in CBASS systems with associated CapW or CapH+CapP transcription factors, suggesting that it may coordinate with these proteins to regulate CBASS transcription in response to DNA damage. These data expand the repertoire of enzymatic activities associated with bacterial CBASS systems and provide new insights into the regulation of these important bacterial immune systems.

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Primary Citation of related structures