7T2A image
Deposition Date 2021-12-03
Release Date 2022-12-28
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7T2A
Keywords:
Title:
Crystal structure of HLA-DP4 in complex with Ply
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.04 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA class II histocompatibility antigen, DP alpha 1 chain
Gene (Uniprot):HLA-DPA1
Chain IDs:A, D
Chain Length:181
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HLA class II histocompatibility antigen, DP beta 1 chain
Gene (Uniprot):HLA-DPB1
Chain IDs:B, E
Chain Length:188
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Pneumolysin-derived peptide
Gene (Uniprot):ply
Chain IDs:C, F
Chain Length:15
Number of Molecules:2
Biological Source:Streptococcus pneumoniae
Ligand Molecules
Primary Citation
CD4 + T cell-mediated recognition of a conserved cholesterol-dependent cytolysin epitope generates broad antibacterial immunity.
Immunity 56 1082 1097.e6 (2023)
PMID: 37100059 DOI: 10.1016/j.immuni.2023.03.020

Abstact

CD4+ T cell-mediated immunity against Streptococcus pneumoniae (pneumococcus) can protect against recurrent bacterial colonization and invasive pneumococcal diseases (IPDs). Although such immune responses are common, the pertinent antigens have remained elusive. We identified an immunodominant CD4+ T cell epitope derived from pneumolysin (Ply), a member of the bacterial cholesterol-dependent cytolysins (CDCs). This epitope was broadly immunogenic as a consequence of presentation by the pervasive human leukocyte antigen (HLA) allotypes DPB1∗02 and DPB1∗04 and recognition via architecturally diverse T cell receptors (TCRs). Moreover, the immunogenicity of Ply427-444 was underpinned by core residues in the conserved undecapeptide region (ECTGLAWEWWR), enabling cross-recognition of heterologous bacterial pathogens expressing CDCs. Molecular studies further showed that HLA-DP4-Ply427-441 was engaged similarly by private and public TCRs. Collectively, these findings reveal the mechanistic determinants of near-global immune focusing on a trans-phyla bacterial epitope, which could inform ancillary strategies to combat various life-threatening infectious diseases, including IPDs.

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Primary Citation of related structures