ISDA

Deposition Date 2021-11-25

Release Date 2022-07-13

Last Version Date 2024-02-28

Entry Detail

PDB ID:

7SYG

Keywords:

RIBOSOME

Title:

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Biological Source:

Source Organism:

Hepatitis C virus (isolate 1) (Taxon ID: 11104)
Oryctolagus cuniculus (Taxon ID: 9986)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.30 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:A (auth: 2)
Chain Length:1870
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Gene (Uniprot):RPSA
Chain IDs:B
Chain Length:101
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TLT8 Pfam ID:PF00318, PF16122

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Gene (Uniprot):RPS3A
Chain IDs:C
Chain Length:264
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SS70 Pfam ID:PF01015

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2
Chain IDs:D
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS3
Gene (Uniprot):RPS3
Chain IDs:E
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TNM3 Pfam ID:PF07650, PF00189

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Chain IDs:F
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TA47 Pfam ID:PF08071, PF00900, PF00467, PF16121

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS7
Gene (Uniprot):RPS5
Chain IDs:G
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TFM5 Pfam ID:PF00177

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS6
Chain IDs:H
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A0A5K1UJS7 Pfam ID:PF01092

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7
Chain IDs:I
Chain Length:432
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SVB0

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS8
Gene (Uniprot):RPS8
Chain IDs:J
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TJW1 Pfam ID:PF01201

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS4
Gene (Uniprot):RPS9
Chain IDs:K
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:B7NZS8 Pfam ID:PF00163, PF01479

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS10
Chain IDs:L
Chain Length:149
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TPV3 Pfam ID:PF03501

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS17
Gene (Uniprot):RPS11
Chain IDs:M
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TRM4 Pfam ID:PF16205, PF00366

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS12
Gene (Uniprot):RPS12
Chain IDs:N
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SFR8 Pfam ID:PF01248

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS15
Gene (Uniprot):RPS13
Chain IDs:O
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SP51 Pfam ID:PF08069, PF00312

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS11
Chain IDs:P
Chain Length:168
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T1F0 Pfam ID:PF00411

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS19
Gene (Uniprot):RPS15
Chain IDs:Q
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U0Q2 Pfam ID:PF00203

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS9
Gene (Uniprot):RPS16
Chain IDs:R
Chain Length:172
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SGX4 Pfam ID:PF00380

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS17
Gene (Uniprot):RPS17
Chain IDs:S
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TU13 Pfam ID:PF00833

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS13
Gene (Uniprot):RPS18
Chain IDs:T
Chain Length:152
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TPG3 Pfam ID:PF00416

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS19
Gene (Uniprot):RPS19
Chain IDs:U
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TN62 Pfam ID:PF01090

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS10
Gene (Uniprot):RPS20
Chain IDs:V
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SIZ2 Pfam ID:PF00338

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS21
Gene (Uniprot):RPS21
Chain IDs:W
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TM82 Pfam ID:PF01249

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS8
Gene (Uniprot):RPS15A
Chain IDs:X
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TG89 Pfam ID:PF00410

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS12
Gene (Uniprot):RPS23
Chain IDs:Y
Chain Length:143
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SZ47 Pfam ID:PF00164

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Chain IDs:Z
Chain Length:400
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T3D8 Pfam ID:PF01282

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):RPS25
Chain IDs:AA (auth: a)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TDB3 Pfam ID:PF03297

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS26
Gene (Uniprot):RPS26
Chain IDs:BA (auth: b)
Chain Length:101
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TFE8 Pfam ID:PF01283

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS27
Gene (Uniprot):RPS27
Chain IDs:CA (auth: c)
Chain Length:264
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TZ76 Pfam ID:PF01667

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS28
Gene (Uniprot):RPS28
Chain IDs:DA (auth: d)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TIB4 Pfam ID:PF01200

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS29
Gene (Uniprot):RPS29
Chain IDs:EA (auth: e)
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U7M4 Pfam ID:PF00253

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS30
Gene (Uniprot):FAU
Chain IDs:FA (auth: f)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T8A2 Pfam ID:PF00240, PF04758

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27a
Gene (Uniprot):RPS27A
Chain IDs:GA (auth: g)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SK22 Pfam ID:PF00240, PF01599

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RACK1
Gene (Uniprot):RACK1
Chain IDs:HA (auth: h)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SJB4 Pfam ID:PF00400

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60s ribosomal protein l41
Gene (Uniprot):RPL41
Chain IDs:IA (auth: n)
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A0A087WNH4 Pfam ID:PF05162

Polymer Type:polyribonucleotide
Molecule:HCV IRES
Chain IDs:JA (auth: z)
Chain Length:400
Number of Molecules:1
Biological Source:Hepatitis C virus (isolate 1)

Ligand Molecules

Primary Citation

Molecular architecture of 40S initiation complexes on the Hepatitis C virus IRES: from ribosomal attachment to eIF5B-mediated reorientation of initiator tRNA

Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J.Show

To Be Published ? ? ? (?)

Primary Citation of related structures