7SQ1 image
Deposition Date 2021-11-04
Release Date 2022-06-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7SQ1
Title:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein gp41
Gene (Uniprot):env
Chain IDs:A (auth: B), C (auth: D), G (auth: F)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:B (auth: C), D (auth: E), H (auth: G)
Chain Length:472
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:C05 Fab heavy chain
Chain IDs:F (auth: H), J (auth: A)
Chain Length:122
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:C05 Fab Light chain
Chain IDs:E (auth: L), I
Chain Length:111
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Induction of tier-2 neutralizing antibodies in mice with a DNA-encoded HIV envelope native like trimer.
Nat Commun 13 695 695 (2022)
PMID: 35121758 DOI: 10.1038/s41467-022-28363-z

Abstact

HIV Envelope (Env) is the main vaccine target for induction of neutralizing antibodies. Stabilizing Env into native-like trimer (NLT) conformations is required for recombinant protein immunogens to induce autologous neutralizing antibodies(nAbs) against difficult to neutralize HIV strains (tier-2) in rabbits and non-human primates. Immunizations of mice with NLTs have generally failed to induce tier-2 nAbs. Here, we show that DNA-encoded NLTs fold properly in vivo and induce autologous tier-2 nAbs in mice. DNA-encoded NLTs also uniquely induce both CD4 + and CD8 + T-cell responses as compared to corresponding protein immunizations. Murine neutralizing antibodies are identified with an advanced sequencing technology. The structure of an Env-Ab (C05) complex, as determined by cryo-EM, identifies a previously undescribed neutralizing Env C3/V5 epitope. Beyond potential functional immunity gains, DNA vaccines permit in vivo folding of structured antigens and provide significant cost and speed advantages for enabling rapid evaluation of new HIV vaccines.

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Primary Citation of related structures