7SOF image
Deposition Date 2021-10-29
Release Date 2021-11-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7SOF
Title:
SARS-CoV-2 S NTD B.1.617.1 kappa variant S2X303 Local Refinement
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:C (auth: A)
Chain Length:1277
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:S2X303 Fab heavy chain
Chain IDs:B (auth: H)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:S2X303 Fab light chain
Chain IDs:A (auth: L)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants.
Science 374 1621 1626 (2021)
PMID: 34751595 DOI: 10.1126/science.abl8506

Abstact

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission leads to the emergence of variants, including the B.1.617.2 (Delta) variant of concern that is causing a new wave of infections and has become globally dominant. We show that these variants dampen the in vitro potency of vaccine-elicited serum neutralizing antibodies and provide a structural framework for describing their immune evasion. Mutations in the B.1.617.1 (Kappa) and Delta spike glycoproteins abrogate recognition by several monoclonal antibodies via alteration of key antigenic sites, including remodeling of the Delta amino-terminal domain. The angiotensin-converting enzyme 2 binding affinities of the Kappa and Delta receptor binding domains are comparable to the Wuhan-Hu-1 isolate, whereas B.1.617.2+ (Delta+) exhibits markedly reduced affinity.

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Primary Citation of related structures