7SLH image
Entry Detail
PDB ID:
7SLH
Keywords:
Title:
Engineered sperm whale myoglobin-based carbene transferase MbBTIC-C3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-10-24
Release Date:
2023-05-03
Method Details:
Experimental Method:
Resolution:
1.15 Å
R-Value Free:
0.12
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 6
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Myoglobin
Mutations:L29F, H64V, V68A, I107L, N122D
Chain IDs:A
Chain Length:154
Number of Molecules:1
Biological Source:Physeter catodon
Primary Citation
Biocatalytic strategy for the construction of sp 3 -rich polycyclic compounds from directed evolution and computational modelling.
Nat.Chem. 16 817 826 (2024)
PMID: 38351380 DOI: 10.1038/s41557-023-01435-3

Abstact

Catalysis with engineered enzymes has provided more efficient routes for the production of active pharmaceutical agents. However, the potential of biocatalysis to assist in early-stage drug discovery campaigns remains largely untapped. In this study, we have developed a biocatalytic strategy for the construction of sp3-rich polycyclic compounds via the intramolecular cyclopropanation of benzothiophenes and related heterocycles. Two carbene transferases with complementary regioisomer selectivity were evolved to catalyse the stereoselective cyclization of benzothiophene substrates bearing diazo ester groups at the C2 or C3 position of the heterocycle. The detailed mechanisms of these reactions were elucidated by a combination of crystallographic and computational analyses. Leveraging these insights, the substrate scope of one of the biocatalysts could be expanded to include previously unreactive substrates, highlighting the value of integrating evolutionary and rational strategies to develop enzymes for new-to-nature transformations. The molecular scaffolds accessed here feature a combination of three-dimensional and stereochemical complexity with 'rule-of-three' properties, which should make them highly valuable for fragment-based drug discovery campaigns.

Legend

Protein

Chemical

Disease

Primary Citation of related structures