7SKX image
Deposition Date 2021-10-21
Release Date 2022-06-08
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7SKX
Keywords:
Title:
Ab initio structure of proteinase K from electron-counted MicroED data
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.20
R-Value Work:
0.14
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteinase K
Gene (Uniprot):PROK
Chain IDs:A (auth: C)
Chain Length:279
Number of Molecules:1
Biological Source:Parengyodontium album
Primary Citation
Ab initio phasing macromolecular structures using electron-counted MicroED data.
Nat.Methods 19 724 729 (2022)
PMID: 35637302 DOI: 10.1038/s41592-022-01485-4

Abstact

Structures of two globular proteins were determined ab initio using microcrystal electron diffraction (MicroED) data that were collected on a direct electron detector in counting mode. Microcrystals were identified using a scanning electron microscope (SEM) and thinned with a focused ion beam (FIB) to produce crystalline lamellae of ideal thickness. Continuous-rotation data were collected using an ultra-low exposure rate to enable electron counting in diffraction. For the first sample, triclinic lysozyme extending to a resolution of 0.87 Å, an ideal helical fragment of only three alanine residues provided initial phases. These phases were improved using density modification, allowing the entire atomic structure to be built automatically. A similar approach was successful on a second macromolecular sample, proteinase K, which is much larger and diffracted to a resolution of 1.5 Å. These results demonstrate that macromolecules can be determined to sub-ångström resolution by MicroED and that ab initio phasing can be successfully applied to counting data.

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Primary Citation of related structures