7SK4 image
Entry Detail
PDB ID:
7SK4
EMDB ID:
Title:
Cryo-EM structure of ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ, an intracellular Fab, and an extracellular Fab
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-10-19
Release Date:
2022-07-27
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Atypical chemokine receptor 3
Chain IDs:A
Chain Length:393
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Stromal cell-derived factor 1
Mutations:N-terminus of CXCL12 (KPV) substituted with LRHQ
Chain IDs:B
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CID25 Fab light chain
Chain IDs:C
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CID25 Fab heavy chain
Chain IDs:D
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CID24 Fab light chain
Chain IDs:E
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CID24 Fab heavy chain
Chain IDs:F
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structures of atypical chemokine receptor 3 reveal the basis for its promiscuity and signaling bias.
Sci Adv 8 eabn8063 eabn8063 (2022)
PMID: 35857509 DOI: 10.1126/sciadv.abn8063

Abstact

Both CXC chemokine receptor 4 (CXCR4) and atypical chemokine receptor 3 (ACKR3) are activated by the chemokine CXCL12 yet evoke distinct cellular responses. CXCR4 is a canonical G protein-coupled receptor (GPCR), whereas ACKR3 is intrinsically biased for arrestin. The molecular basis for this difference is not understood. Here, we describe cryo-EM structures of ACKR3 in complex with CXCL12, a more potent CXCL12 variant, and a small-molecule agonist. The bound chemokines adopt an unexpected pose relative to those established for CXCR4 and observed in other receptor-chemokine complexes. Along with functional studies, these structures provide insight into the ligand-binding promiscuity of ACKR3, why it fails to couple to G proteins, and its bias toward β-arrestin. The results lay the groundwork for understanding the physiological interplay of ACKR3 with other GPCRs.

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Primary Citation of related structures