7SIS image
Deposition Date 2021-10-14
Release Date 2022-11-23
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7SIS
Keywords:
IMMUNE SYSTEM
Title:
SARS-CoV-2 Spike-derived peptide S976-984 (VLNDILSRL) presented by HLA-A*02:01
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.90 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
7SIS validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A-2 alpha chain
Gene (Uniprot):HLA-A
Chain IDs:A
Chain Length:277
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q861F7 Pfam ID:PF00129, PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S2' peptide VLNDILSRL
Gene (Uniprot):S
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2
Ligand Molecules
ACT
CD
ZN
Primary Citation
The impact of SARS-CoV-2 spike mutation on peptide presentation is HLA allomorph-specific
Curr Res Struct Biol ? ? ? (2024)
DOI: 10.1016/j.crstbi.2024.100148
Primary Citation of related structures
7SIS
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