7SHK image
Deposition Date 2021-10-09
Release Date 2021-12-08
Last Version Date 2024-06-05
Entry Detail
PDB ID:
7SHK
Keywords:
Title:
Structure of Xenopus laevis CRL2Lrr1 (State 1)
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CULLIN_2 domain-containing protein
Chain IDs:A
Chain Length:745
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tceb2-prov protein
Gene (Uniprot):elob.L
Chain IDs:B
Chain Length:119
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-C
Gene (Uniprot):eloc.L
Chain IDs:C
Chain Length:112
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lrr1
Gene (Uniprot):lrr1.L
Chain IDs:D (auth: L)
Chain Length:418
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RING-type domain-containing protein
Chain IDs:E (auth: R)
Chain Length:108
Number of Molecules:1
Biological Source:Xenopus laevis
Ligand Molecules
Primary Citation
Structure of CRL2Lrr1, the E3 ubiquitin ligase that promotes DNA replication termination in vertebrates.
Nucleic Acids Res. 49 13194 13206 (2021)
PMID: 34850944 DOI: 10.1093/nar/gkab1174

Abstact

When vertebrate replisomes from neighboring origins converge, the Mcm7 subunit of the replicative helicase, CMG, is ubiquitylated by the E3 ubiquitin ligase, CRL2Lrr1. Polyubiquitylated CMG is then disassembled by the p97 ATPase, leading to replication termination. To avoid premature replisome disassembly, CRL2Lrr1 is only recruited to CMGs after they converge, but the underlying mechanism is unclear. Here, we use cryogenic electron microscopy to determine structures of recombinant Xenopus laevis CRL2Lrr1 with and without neddylation. The structures reveal that CRL2Lrr1 adopts an unusually open architecture, in which the putative substrate-recognition subunit, Lrr1, is located far from the catalytic module that catalyzes ubiquitin transfer. We further demonstrate that a predicted, flexible pleckstrin homology domain at the N-terminus of Lrr1 is essential to target CRL2Lrr1 to terminated CMGs. We propose a hypothetical model that explains how CRL2Lrr1's catalytic module is positioned next to the ubiquitylation site on Mcm7, and why CRL2Lrr1 binds CMG only after replisomes converge.

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