7SHG image
Deposition Date 2021-10-08
Release Date 2022-03-02
Last Version Date 2024-04-03
Entry Detail
PDB ID:
7SHG
Keywords:
Title:
Polysaccharide ribofuranosyl transferase from Thermobacillus composti
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribofuranosyl transferase
Gene (Uniprot):Theco_3912
Chain IDs:A, B
Chain Length:648
Number of Molecules:2
Biological Source:Thermobacillus composti
Primary Citation
The biosynthetic origin of ribofuranose in bacterial polysaccharides.
Nat.Chem.Biol. 18 530 537 (2022)
PMID: 35393575 DOI: 10.1038/s41589-022-01006-6

Abstact

Bacterial surface polysaccharides are assembled by glycosyltransferase enzymes that typically use sugar nucleotide or polyprenyl-monophosphosugar activated donors. Characterized representatives exist for many monosaccharides but neither the donor nor the corresponding glycosyltransferases have been definitively identified for ribofuranose residues found in some polysaccharides. Klebsiella pneumoniae O-antigen polysaccharides provided prototypes to identify dual-domain ribofuranosyltransferase proteins catalyzing a two-step reaction sequence. Phosphoribosyl-5-phospho-D-ribosyl-α-1-diphosphate serves as the donor for a glycan acceptor-specific phosphoribosyl transferase (gPRT), and a more promiscuous phosphoribosyl-phosphatase (PRP) then removes the residual 5'-phosphate. The 2.5-Å resolution crystal structure of a dual-domain ribofuranosyltransferase ortholog from Thermobacillus composti revealed a PRP domain that conserves many features of the phosphatase members of the haloacid dehalogenase family, and a gPRT domain that diverges substantially from all previously characterized phosphoribosyl transferases. The gPRT represents a new glycosyltransferase fold conserved in the most abundant ribofuranosyltransferase family.

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