7SFR image
Entry Detail
PDB ID:
7SFR
EMDB ID:
Title:
Unmethylated Mtb Ribosome 50S with SEQ-9
Biological Source:
PDB Version:
Deposition Date:
2021-10-04
Release Date:
2022-10-12
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:A (auth: 0)
Chain Length:57
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:B (auth: 1)
Chain Length:55
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:C (auth: 2)
Chain Length:47
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:D (auth: 3)
Chain Length:64
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:E (auth: 4)
Chain Length:37
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:F (auth: 6)
Chain Length:80
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polyribonucleotide
Description:23S rRNA
Chain IDs:G (auth: A)
Chain Length:1537
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polyribonucleotide
Description:5S rRNA
Chain IDs:H (auth: B)
Chain Length:115
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:I (auth: C)
Chain Length:274
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:J (auth: D)
Chain Length:213
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:K (auth: E)
Chain Length:220
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:L (auth: F)
Chain Length:96
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:M (auth: G)
Chain Length:177
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:N (auth: H)
Chain Length:152
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:O (auth: J)
Chain Length:195
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:P (auth: K)
Chain Length:122
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:Q (auth: L)
Chain Length:124
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:R (auth: M)
Chain Length:124
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:S (auth: N)
Chain Length:61
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:T (auth: O)
Chain Length:122
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:U (auth: P)
Chain Length:162
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:V (auth: Q)
Chain Length:135
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:W (auth: R)
Chain Length:84
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:X (auth: S)
Chain Length:93
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:Y (auth: T)
Chain Length:86
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:Z (auth: U)
Chain Length:105
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:AA (auth: V)
Chain Length:22
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:BA (auth: W)
Chain Length:86
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:CA (auth: X)
Chain Length:64
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:DA (auth: Y)
Chain Length:77
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:EA (auth: Z)
Chain Length:65
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polyribonucleotide
Description:16S rRNA
Chain IDs:FA (auth: a)
Chain Length:1537
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S3
Chain IDs:GA (auth: c)
Chain Length:274
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:HA (auth: d)
Chain Length:213
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:IA (auth: e)
Chain Length:220
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:JA (auth: f)
Chain Length:96
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S7
Chain IDs:KA (auth: g)
Chain Length:177
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:LA (auth: h)
Chain Length:152
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S9
Chain IDs:MA (auth: i)
Chain Length:151
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S10
Chain IDs:NA (auth: j)
Chain Length:195
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:OA (auth: k)
Chain Length:122
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:PA (auth: l)
Chain Length:124
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S13
Chain IDs:QA (auth: m)
Chain Length:124
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S14 type Z
Chain IDs:RA (auth: n)
Chain Length:61
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:SA (auth: o)
Chain Length:122
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:TA (auth: p)
Chain Length:162
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:UA (auth: q)
Chain Length:135
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:VA (auth: r)
Chain Length:84
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:WA (auth: s)
Chain Length:93
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:XA (auth: t)
Chain Length:86
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Description:peptide
Chain IDs:YA (auth: v)
Chain Length:22
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2MG FA G modified residue
4OC FA C modified residue
5MC FA C modified residue
5MU G U modified residue
6MZ G A modified residue
G7M FA G modified residue
MA6 FA A modified residue
OMC G C modified residue
OMG G G modified residue
UR3 FA U modified residue
Primary Citation

Abstact

The emergence of drug-resistant tuberculosis has created an urgent need for new anti-tubercular agents. Here, we report the discovery of a series of macrolides called sequanamycins with outstanding in vitro and in vivo activity against Mycobacterium tuberculosis (Mtb). Sequanamycins are bacterial ribosome inhibitors that interact with the ribosome in a similar manner to classic macrolides like erythromycin and clarithromycin, but with binding characteristics that allow them to overcome the inherent macrolide resistance of Mtb. Structures of the ribosome with bound inhibitors were used to optimize sequanamycin to produce the advanced lead compound SEQ-9. SEQ-9 was efficacious in mouse models of acute and chronic TB as a single agent, and it demonstrated bactericidal activity in a murine TB infection model in combination with other TB drugs. These results support further investigation of this series as TB clinical candidates, with the potential for use in new regimens against drug-susceptible and drug-resistant TB.

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Primary Citation of related structures