7SF5 image
Deposition Date 2021-10-03
Release Date 2021-12-01
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7SF5
Keywords:
Title:
M. tb EgtD in complex with HD3
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histidine N-alpha-methyltransferase
Chain IDs:A, B
Chain Length:321
Number of Molecules:2
Biological Source:Mycobacterium tuberculosis
Ligand Molecules
Primary Citation
Inhibitors of Mycobacterium tuberculosis EgtD target both substrate binding sites to limit hercynine production.
Sci Rep 11 22240 22240 (2021)
PMID: 34782676 DOI: 10.1038/s41598-021-01526-6

Abstact

Ergothioneine (EGT) is a low molecular weight histidine betaine essential in all domains of life but only synthesized by selected few organisms. Synthesis of EGT by Mycobacterium tuberculosis (M. tb) is critical for maintaining bioenergetic homeostasis and protecting the bacterium from alkylating agents, oxidative stress, and anti-tubercular drugs. EgtD, an S-adenosylmethionine-dependent methyltransferase (AdoMet), catalyzes the trimethylation of L-Histidine to initiate EGT biosynthesis and this reaction has been shown to be essential for EGT production in mycobacteria and for long-term infection of murine macrophages by M. tb. In this work, library screening and structure-guided strategies identified multiple classes of M. tb EgtD inhibitors that bind in various regions of the enzyme active site. X-ray crystal structures of EgtD-inhibitor complexes confirm that L-Histidine analogs bind solely to the L-Histidine binding site while drug-like inhibitors, such as TGX-221, and S-Glycyl-H-1152 span both the L-Histidine and AdoMet binding sites. These enzyme-inhibitor complexes provide detailed structural information of compound scaffolds useful for developing more potent inhibitors that could shorten Tuberculosis treatment regimens by weakening important bacterial defenses.

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Primary Citation of related structures