7SEN image
Entry Detail
PDB ID:
7SEN
Keywords:
Title:
Crystal structure of Fab containing a fluorescent noncanonical amino acid with blocked excited state proton transfer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-09-30
Release Date:
2022-02-02
Method Details:
Experimental Method:
Resolution:
2.09 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:5c8* Fab heavy chain
Mutations:W47L
Chain IDs:A (auth: H)
Chain Length:226
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:5c8* Fab light chain
Chain IDs:B (auth: L)
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural Basis for Blocked Excited State Proton Transfer in a Fluorescent, Photoacidic Non-Canonical Amino Acid-Containing Antibody Fragment.
J.Mol.Biol. 434 167455 167455 (2022)
PMID: 35033559 DOI: 10.1016/j.jmb.2022.167455

Abstact

The fluorescent non-canonical amino acid (fNCAA) L-(7-hydroxycoumarin-4-yl)ethylglycine (7-HCAA) contains a photoacidic 7-hydroxycoumarin (7-HC) side chain whose fluorescence properties can be tuned by its environment. In proteins, many alterations to 7-HCAA's fluorescence spectra have been reported including increases and decreases in intensity and red- and blue-shifted emission maxima. The ability to rationally design protein environments that alter 7-HCAA's fluorescence properties in predictable ways could lead to novel protein-based sensors of biological function. However, these efforts are likely limited by a lack of structural characterization of 7-HCAA-containing proteins. Here, we report the steady-state spectroscopic and x-ray crystallographic characterization of a 7-HCAA-containing antibody fragment (in the apo and antigen-bound forms) in which a substantially blue-shifted 7-HCAA emission maximum (∼70 nm) is observed relative to the free amino acid. Our structural characterization of these proteins provides evidence that the blue shift is a consequence of the fact that excited state proton transfer (ESPT) from the 7-HC phenol has been almost completely blocked by interactions with the protein backbone. Furthermore, a direct interaction between a residue in the antigen and the fluorophore served to further block proton transfer relative to the apoprotein. The structural basis of the unprecedented blue shift in 7-HCAA emission reported here provides a framework for the development of new fluorescent protein-based sensors.

Legend

Protein

Chemical

Disease

Primary Citation of related structures