7SD2 image
Deposition Date 2021-09-29
Release Date 2022-08-10
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7SD2
Keywords:
Title:
Murine Fab that recognizes Hev b 8 (profilin for Hevea brasiliensis)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.75 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy Chain Antibody IgE/Fab anti-profilin Hev b 8
Chain IDs:A (auth: H), C (auth: A), E (auth: C)
Chain Length:209
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Light Chain Antibody IgE/Fab anti-profilin Hev b 8
Chain IDs:B (auth: L), D (auth: B), F (auth: D)
Chain Length:214
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation

Abstact

Allergies have become a rising health problem, where plentiful substances can trigger IgE-mediated allergies in humans. While profilins are considered minor allergens, these ubiquitous proteins are primary molecules involved in cross-reactivity and pollen-food allergy syndrome. Here we report the first crystal structures of murine Fab/IgE, with its chains naturally paired, in complex with the allergen profilin from Hevea brasiliensis (Hev b 8). The crystallographic models revealed that the IgE's six complementarity-determining regions (CDRs) interact with the allergen, comprising a rigid paratope-epitope surface of 926 Å2, which includes an extensive network of interactions. Interestingly, we also observed previously unreported flexibility at Fab/IgE's elbow angle, which did not influence the shape of the paratope. The Fab/IgE exhibits a high affinity for Hev b 8, even when using 1 M NaCl in BLI experiments. Finally, based on the encouraging cross-reactivity assays using two mutants of the maize profilin (Zea m 12), this antibody could be a promising tool in IgE engineering for diagnosis and research applications.

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Primary Citation of related structures