7SBQ image
Entry Detail
PDB ID:
7SBQ
EMDB ID:
Keywords:
Title:
One RBD-up 1 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Biological Source:
PDB Version:
Deposition Date:
2021-09-25
Release Date:
2021-11-03
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:A, B, C
Chain Length:1310
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation
Membrane fusion and immune evasion by the spike protein of SARS-CoV-2 Delta variant.
Science 374 1353 1360 (2021)
PMID: 34698504 DOI: 10.1126/science.abl9463

Abstact

The Delta variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has outcompeted previously prevalent variants and become a dominant strain worldwide. We report the structure, function, and antigenicity of its full-length spike (S) trimer as well as those of the Gamma and Kappa variants, and compare their characteristics with the G614, Alpha, and Beta variants. Delta S can fuse membranes more efficiently at low levels of cellular receptor angiotensin converting enzyme 2 (ACE2), and its pseudotyped viruses infect target cells substantially faster than the other five variants, possibly accounting for its heightened transmissibility. Each variant shows different rearrangement of the antigenic surface of the amino-terminal domain of the S protein but only makes produces changes in the receptor binding domain (RBD), making the RBD a better target for therapeutic antibodies.

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Primary Citation of related structures