7SBD image
Entry Detail
PDB ID:
7SBD
Title:
Murine Fab/IgE in complex with profilin from Hevea brasieliensis (Hev b 8)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2021-09-24
Release Date:
2022-08-10
Method Details:
Experimental Method:
Resolution:
3.04 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Profilin-2
Chain IDs:C
Chain Length:135
Number of Molecules:1
Biological Source:Hevea brasiliensis
Polymer Type:polypeptide(L)
Description:Fab/IgE Heavy chain
Chain IDs:A (auth: H)
Chain Length:209
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab/IgE Light chain
Chain IDs:B (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
A native IgE in complex with profilin provides insights into allergen recognition and cross-reactivity.
Commun Biol 5 748 748 (2022)
PMID: 35902770 DOI: 10.1038/s42003-022-03718-w

Abstact

Allergies have become a rising health problem, where plentiful substances can trigger IgE-mediated allergies in humans. While profilins are considered minor allergens, these ubiquitous proteins are primary molecules involved in cross-reactivity and pollen-food allergy syndrome. Here we report the first crystal structures of murine Fab/IgE, with its chains naturally paired, in complex with the allergen profilin from Hevea brasiliensis (Hev b 8). The crystallographic models revealed that the IgE's six complementarity-determining regions (CDRs) interact with the allergen, comprising a rigid paratope-epitope surface of 926 Å2, which includes an extensive network of interactions. Interestingly, we also observed previously unreported flexibility at Fab/IgE's elbow angle, which did not influence the shape of the paratope. The Fab/IgE exhibits a high affinity for Hev b 8, even when using 1 M NaCl in BLI experiments. Finally, based on the encouraging cross-reactivity assays using two mutants of the maize profilin (Zea m 12), this antibody could be a promising tool in IgE engineering for diagnosis and research applications.

Legend

Protein

Chemical

Disease

Primary Citation of related structures