7SB4 image
Entry Detail
PDB ID:
7SB4
EMDB ID:
Title:
Structure of OC43 spike in complex with polyclonal Fab2 (Donor 1412)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2021-09-23
Release Date:
2022-05-04
Method Details:
Experimental Method:
Resolution:
4.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike protein
Chain IDs:A, B (auth: C), C (auth: B)
Chain Length:1367
Number of Molecules:3
Biological Source:Human coronavirus OC43
Polymer Type:polypeptide(L)
Description:Human polyclonal Fab model with polyalanine backbone - Heavy chain
Chain IDs:D (auth: H), E (auth: L)
Chain Length:113
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural mapping of antibody landscapes to human betacoronavirus spike proteins.
Sci Adv 8 eabn2911 eabn2911 (2022)
PMID: 35507649 DOI: 10.1126/sciadv.abn2911

Abstact

Preexisting immunity against seasonal coronaviruses (CoVs) represents an important variable in predicting antibody responses and disease severity to severe acute respiratory syndrome CoV-2 (SARS-CoV-2) infections. We used electron microscopy-based polyclonal epitope mapping (EMPEM) to characterize the antibody specificities against β-CoV spike proteins in prepandemic (PP) sera or SARS-CoV-2 convalescent (SC) sera. We observed that most PP sera had antibodies specific to seasonal human CoVs (HCoVs) OC43 and HKU1 spike proteins while the SC sera showed reactivity across all human β-CoVs. Detailed molecular mapping of spike-antibody complexes revealed epitopes that were differentially targeted by preexisting antibodies and SC serum antibodies. Our studies provide an antigenic landscape to β-HCoV spikes in the general population serving as a basis for cross-reactive epitope analyses in SARS-CoV-2-infected individuals.

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