7S78 image
Entry Detail
PDB ID:
7S78
EMDB ID:
Keywords:
Title:
Structure of a cell-entry defective human adenovirus provides insights into precursor proteins and capsid maturation
Biological Source:
PDB Version:
Deposition Date:
2021-09-15
Release Date:
2021-12-01
Method Details:
Experimental Method:
Resolution:
3.72 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Unknown-1
Chain IDs:DA (auth: 5)
Chain Length:16
Number of Molecules:1
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Unknown-2
Chain IDs:EA (auth: 6)
Chain Length:10
Number of Molecules:1
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Hexon protein
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:952
Number of Molecules:12
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Pre-hexon-linking protein IIIa
Chain IDs:N (auth: M)
Chain Length:585
Number of Molecules:1
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Penton protein
Chain IDs:M (auth: N)
Chain Length:571
Number of Molecules:1
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Hexon-interlacing protein
Chain IDs:O (auth: P), P (auth: Q), Q (auth: R), R (auth: S)
Chain Length:140
Number of Molecules:4
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Pre-hexon-linking protein VIII
Chain IDs:S (auth: U), T (auth: V)
Chain Length:227
Number of Molecules:2
Biological Source:Human adenovirus C serotype 5
Polymer Type:polypeptide(L)
Description:Pre-protein VI
Chain IDs:U (auth: W), V (auth: X), W (auth: Y), X (auth: Z), Y (auth: 0), Z (auth: 1), AA (auth: 2), BA (auth: 3), CA (auth: 4)
Chain Length:250
Number of Molecules:9
Biological Source:Human adenovirus C serotype 5
Ligand Molecules
Primary Citation
Structure of a Cell Entry Defective Human Adenovirus Provides Insights into Precursor Proteins and Capsid Maturation.
J.Mol.Biol. 434 167350 167350 (2021)
PMID: 34774568 DOI: 10.1016/j.jmb.2021.167350

Abstact

Maturation of adenoviruses is distinguished by proteolytic processing of several interior minor capsid proteins and core proteins by the adenoviral protease and subsequent reorganization of adenovirus core. We report the results derived from the icosahedrally averaged cryo-EM structure of a cell entry defective form of adenovirus, designated ts1, at a resolution of 3.7 Å as well as of the localized reconstructions of unique hexons and penton base. The virion structure revealed the structures and organization of precursors of minor capsid proteins, pIIIa, pVI and pVIII, which are closely associated with the hexons on the capsid interior. In addition to a well-ordered helical domain (a.a. 310-397) of pIIIa, highlights of the structure include the precursors of VIII display significantly different structures near the cleavage sites. Moreover, we traced residues 4-96 of the membrane lytic protein (pVI) that includes an amphipathic helix occluded deep in the hexon cavity suggesting the possibility of co-assembly of hexons with the precursors of VI. In addition, we observe a second copy of pVI ordered up to residue L40 in the peripentonal hexons and a few fragments of density corresponding to 2nd and 3rd copies of pVI in other hexons. However, we see no evidence of precursors of VII binding in the hexon cavity. These findings suggest the possibility that differently bound pVI molecules undergo processing at the N-terminal cleavage sites at varying efficiencies, subsequently creating competition between the cleaved and uncleaved forms of VI, followed by reorganization, processing, and release of VI molecules from the hexon cavities.

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