7S1P image
Deposition Date 2021-09-02
Release Date 2022-03-16
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7S1P
Title:
PRMT5/MEP50 crystal structure with sinefungin bound
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.21 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein arginine N-methyltransferase 5
Gene (Uniprot):PRMT5
Chain IDs:A
Chain Length:645
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Methylosome protein 50
Gene (Uniprot):WDR77
Chain IDs:B
Chain Length:350
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Fragment-Based Discovery of MRTX1719, a Synthetic Lethal Inhibitor of the PRMT5•MTA Complex for the Treatment of MTAP -Deleted Cancers.
J.Med.Chem. 65 1749 1766 (2022)
PMID: 35041419 DOI: 10.1021/acs.jmedchem.1c01900

Abstact

The PRMT5•MTA complex has recently emerged as a new synthetically lethal drug target for the treatment of MTAP-deleted cancers. Here, we report the discovery of development candidate MRTX1719. MRTX1719 is a potent and selective binder to the PRMT5•MTA complex and selectively inhibits PRMT5 activity in MTAP-deleted cells compared to MTAP-wild-type cells. Daily oral administration of MRTX1719 to tumor xenograft-bearing mice demonstrated dose-dependent inhibition of PRMT5-dependent symmetric dimethylarginine protein modification in MTAP-deleted tumors that correlated with antitumor activity. A 4-(aminomethyl)phthalazin-1(2H)-one hit was identified through a fragment-based screen, followed by X-ray crystallography, to confirm binding to the PRMT5•MTA complex. Fragment growth supported by structural insights from X-ray crystallography coupled with optimization of pharmacokinetic properties aided the discovery of development candidate MRTX1719.

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Primary Citation of related structures