7S0W image
Deposition Date 2021-08-31
Release Date 2022-05-04
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7S0W
Keywords:
Title:
Crystal structure of the T337M variant of human PGM-1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphoglucomutase-1
Gene (Uniprot):PGM1
Mutagens:T337M
Chain IDs:A, B
Chain Length:585
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Effects of the T337M and G391V disease-related variants on human phosphoglucomutase 1: structural disruptions large and small.
Acta Crystallogr.,Sect.F 78 200 209 (2022)
PMID: 35506765 DOI: 10.1107/S2053230X22004174

Abstact

Phosphoglucomutase 1 (PGM1) plays a central role in glucose homeostasis in human cells. Missense variants of this enzyme cause an inborn error of metabolism, which is categorized as a congenital disorder of glycosylation. Here, two disease-related variants of PGM1, T337M and G391V, which are both located in domain 3 of the four-domain protein, were characterized via X-ray crystallography and biochemical assays. The studies show multiple impacts resulting from these dysfunctional variants, including both short- and long-range structural perturbations. In the T337M variant these are limited to a small shift in an active-site loop, consistent with reduced enzyme activity. In contrast, the G391V variant produces a cascade of structural perturbations, including displacement of both the catalytic phosphoserine and metal-binding loops. This work reinforces several themes that were found in prior studies of dysfunctional PGM1 variants, including increased structural flexibility and the outsized impacts of mutations affecting interdomain interfaces. The molecular mechanisms of PGM1 variants have implications for newly described inherited disorders of related enzymes.

Legend

Protein

Chemical

Disease

Primary Citation of related structures