7RZ3 image
Entry Detail
PDB ID:
7RZ3
Keywords:
Title:
The solution structure of remipede double-ICK toxin phi-Xibalbin3-Xt3a
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-08-27
Release Date:
2022-08-31
Method Details:
Experimental Method:
Conformers Calculated:
30
Conformers Submitted:
10
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Xt3a
Chain IDs:A
Chain Length:82
Number of Molecules:1
Biological Source:Xibalbanus tulumensis
Ligand Molecules
Primary Citation
A bivalent remipede toxin promotes calcium release via ryanodine receptor activation.
Nat Commun 14 1036 1036 (2023)
PMID: 36823422 DOI: 10.1038/s41467-023-36579-w

Abstact

Multivalent ligands of ion channels have proven to be both very rare and highly valuable in yielding unique insights into channel structure and pharmacology. Here, we describe a bivalent peptide from the venom of Xibalbanus tulumensis, a troglobitic arthropod from the enigmatic class Remipedia, that causes persistent calcium release by activation of ion channels involved in muscle contraction. The high-resolution solution structure of φ-Xibalbin3-Xt3a reveals a tandem repeat arrangement of inhibitor-cysteine knot (ICK) domains previously only found in spider venoms. The individual repeats of Xt3a share sequence similarity with a family of scorpion toxins that target ryanodine receptors (RyR). Single-channel electrophysiology and quantification of released Ca2+ stores within skinned muscle fibers confirm Xt3a as a bivalent RyR modulator. Our results reveal convergent evolution of RyR targeting toxins in remipede and scorpion venoms, while the tandem-ICK repeat architecture is an evolutionary innovation that is convergent with toxins from spider venoms.

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Primary Citation of related structures