7RYU image
Entry Detail
PDB ID:
7RYU
Keywords:
Title:
Anti-HIV neutralizing antibody Ab1303 Fab isolated from sequentially immunized mcaques
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-08-26
Release Date:
2022-01-19
Method Details:
Experimental Method:
Resolution:
1.51 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ab1303 Fab heavy chain
Chain IDs:A (auth: H)
Chain Length:235
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:Ab1303 Fab light chain
Chain IDs:B (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Macaca mulatta
Primary Citation
Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer.
Nat Commun 13 732 732 (2022)
PMID: 35136084 DOI: 10.1038/s41467-022-28424-3

Abstact

Broadly-neutralizing antibodies (bNAbs) against HIV-1 Env can protect from infection. We characterize Ab1303 and Ab1573, heterologously-neutralizing CD4-binding site (CD4bs) antibodies, isolated from sequentially-immunized macaques. Ab1303/Ab1573 binding is observed only when Env trimers are not constrained in the closed, prefusion conformation. Fab-Env cryo-EM structures show that both antibodies recognize the CD4bs on Env trimer with an 'occluded-open' conformation between closed, as targeted by bNAbs, and fully-open, as recognized by CD4. The occluded-open Env trimer conformation includes outwardly-rotated gp120 subunits, but unlike CD4-bound Envs, does not exhibit V1V2 displacement, 4-stranded gp120 bridging sheet, or co-receptor binding site exposure. Inter-protomer distances within trimers measured by double electron-electron resonance spectroscopy suggest an equilibrium between occluded-open and closed Env conformations, consistent with Ab1303/Ab1573 binding stabilizing an existing conformation. Studies of Ab1303/Ab1573 demonstrate that CD4bs neutralizing antibodies that bind open Env trimers can be raised by immunization, thereby informing immunogen design and antibody therapeutic efforts.

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