7RY6 image
Entry Detail
PDB ID:
7RY6
Keywords:
Title:
Solution NMR structural bundle of the first cyclization domain from yersiniabactin synthetase (Cy1) impacted by dynamics
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-08-24
Release Date:
2022-07-13
Method Details:
Experimental Method:
Conformers Calculated:
500
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HMWP2 nonribosomal peptide synthetase
Chain IDs:A
Chain Length:453
Number of Molecules:1
Biological Source:Yersinia pestis
Ligand Molecules
Primary Citation
Global protein dynamics as communication sensors in peptide synthetase domains.
Sci Adv 8 eabn6549 eabn6549 (2022)
PMID: 35857508 DOI: 10.1126/sciadv.abn6549

Abstact

Biological activity is governed by the timely redistribution of molecular interactions, and static structural snapshots often appear insufficient to provide the molecular determinants that choreograph communication. This conundrum applies to multidomain enzymatic systems called nonribosomal peptide synthetases (NRPSs), which assemble simple substrates into complex metabolites, where a dynamic domain organization challenges rational design to produce new pharmaceuticals. Using a nuclear magnetic resonance (NMR) atomic-level readout of biochemical transformations, we demonstrate that global structural fluctuations help promote substrate-dependent communication and allosteric responses, and impeding these global dynamics by a point-site mutation hampers allostery and molecular recognition. Our results establish global structural dynamics as sensors of molecular events that can remodel domain interactions, and they provide new perspectives on mechanisms of allostery, protein communication, and NRPS synthesis.

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