7RSX image
Deposition Date 2021-08-12
Release Date 2022-06-08
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7RSX
Keywords:
Title:
HIV-1 gp120 complex with CJF-III-049-S
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ENVELOPE GLYCOPROTEIN GP120
Chain IDs:A (auth: C), B, C (auth: A), D
Chain Length:362
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Primary Citation
Identification of gp120 Residue His105 as a Novel Target for HIV-1 Neutralization by Small-Molecule CD4-Mimics.
Acs Med.Chem.Lett. 12 1824 1831 (2021)
PMID: 34795873 DOI: 10.1021/acsmedchemlett.1c00437

Abstact

The design and synthesis of butyl chain derivatives at the indane ring 3-position of our lead CD4-mimetic compound BNM-III-170 that inhibits human immunodeficiency virus (HIV-1) infection are reported. Optimization efforts were guided by crystallographic and computational analysis of the small-molecule ligands of the Phe43 cavity of the envelope glycoprotein gp120. Biological evaluation of 11-21 revealed that members of this series of CD4-mimetic compounds are able to inhibit HIV-1 viral entry into target cells more potently and with greater breadth compared to BNM-III-170. Crystallographic analysis of the binding pocket of 14, 16, and 17 revealed a novel hydrogen bonding interaction between His105 and a primary hydroxyl group on the butyl side chain. Further optimization of this interaction with the His105 residue holds the promise of more potent CD4-mimetic compounds.

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Primary Citation of related structures