7RQ6 image
Entry Detail
PDB ID:
7RQ6
EMDB ID:
Title:
Cryo-EM structure of SARS-CoV-2 spike in complex with non-neutralizing NTD-directed CV3-13 Fab isolated from convalescent individual
Biological Source:
PDB Version:
Deposition Date:
2021-08-05
Release Date:
2022-04-20
Method Details:
Experimental Method:
Resolution:
4.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, D (auth: B), G (auth: C)
Chain Length:1246
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:CV3-13 Fab heavy chain
Chain IDs:B (auth: H), E (auth: D), H (auth: J)
Chain Length:225
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CV3-13 Fab light chain
Chain IDs:C (auth: L), F (auth: E), I (auth: K)
Chain Length:212
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A Fc-enhanced NTD-binding non-neutralizing antibody delays virus spread and synergizes with a nAb to protect mice from lethal SARS-CoV-2 infection.
Cell Rep 38 110368 110368 (2022)
PMID: 35123652 DOI: 10.1016/j.celrep.2022.110368

Abstact

Emerging evidence indicates that both neutralizing and Fc-mediated effector functions of antibodies contribute to protection against SARS-CoV-2. It is unclear whether Fc-effector functions alone can protect against SARS-CoV-2. Here, we isolated CV3-13, a non-neutralizing antibody, from a convalescent individual with potent Fc-mediated effector functions. The cryoelectron microscopy structure of CV3-13 in complex with the SARS-CoV-2 spike reveals that the antibody binds from a distinct angle of approach to an N-terminal domain (NTD) epitope that only partially overlaps with the NTD supersite recognized by neutralizing antibodies. CV3-13 does not alter the replication dynamics of SARS-CoV-2 in K18-hACE2 mice, but its Fc-enhanced version significantly delays virus spread, neuroinvasion, and death in prophylactic settings. Interestingly, the combination of Fc-enhanced non-neutralizing CV3-13 with Fc-compromised neutralizing CV3-25 completely protects mice from lethal SARS-CoV-2 infection. Altogether, our data demonstrate that efficient Fc-mediated effector functions can potently contribute to the in vivo efficacy of anti-SARS-CoV-2 antibodies.

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Primary Citation of related structures