7RLO image
Deposition Date 2021-07-26
Release Date 2021-12-22
Last Version Date 2024-06-05
Entry Detail
PDB ID:
7RLO
Keywords:
Title:
Structure of the human eukaryotic translation initiation factor 2B (eIF2B) in complex with a viral protein NSs
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit epsilon
Gene (Uniprot):EIF2B5
Chain IDs:A, B
Chain Length:721
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit beta
Gene (Uniprot):EIF2B2
Chain IDs:C, D
Chain Length:351
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit delta
Gene (Uniprot):EIF2B4
Chain IDs:E, F
Chain Length:523
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit alpha
Gene (Uniprot):EIF2B1
Chain IDs:G, H
Chain Length:305
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit gamma
Gene (Uniprot):EIF2B3
Chain IDs:I, J
Chain Length:452
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-structural protein NS-S
Gene (Uniprot):NSS
Chain IDs:K, L
Chain Length:269
Number of Molecules:2
Biological Source:Sandfly fever sicilian virus
Ligand Molecules
Primary Citation
Viral evasion of the integrated stress response through antagonism of eIF2-P binding to eIF2B.
Nat Commun 12 7103 7103 (2021)
PMID: 34876554 DOI: 10.1038/s41467-021-26164-4

Abstact

Viral infection triggers activation of the integrated stress response (ISR). In response to viral double-stranded RNA (dsRNA), RNA-activated protein kinase (PKR) phosphorylates the translation initiation factor eIF2, converting it from a translation initiator into a potent translation inhibitor and this restricts the synthesis of viral proteins. Phosphorylated eIF2 (eIF2-P) inhibits translation by binding to eIF2's dedicated, heterodecameric nucleotide exchange factor eIF2B and conformationally inactivating it. We show that the NSs protein of Sandfly Fever Sicilian virus (SFSV) allows the virus to evade the ISR. Mechanistically, NSs tightly binds to eIF2B (KD = 30 nM), blocks eIF2-P binding, and rescues eIF2B GEF activity. Cryo-EM structures demonstrate that SFSV NSs and eIF2-P directly compete, with the primary NSs contacts to eIF2Bα mediated by five 'aromatic fingers'. NSs binding preserves eIF2B activity by maintaining eIF2B's conformation in its active A-State.

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Chemical

Disease

Primary Citation of related structures
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