7RIV image
Entry Detail
PDB ID:
7RIV
Keywords:
Title:
human PXR LBD bound to GSK001
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-07-20
Release Date:
2021-08-25
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Isoform 1C of Nuclear receptor subfamily 1 group I member 2
Chain IDs:A
Chain Length:298
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Overcoming the Pregnane X Receptor Liability: Rational Design to Eliminate PXR-Mediated CYP Induction.
Acs Med.Chem.Lett. 12 1396 1404 (2021)
PMID: 34531948 DOI: 10.1021/acsmedchemlett.1c00187

Abstact

The pregnane X receptor (PXR) regulates expression of proteins responsible for all three phases required for the detoxification mechanism, which include CYP450 enzymes, phase II enzymes, and multidrug efflux pumps. Therefore, PXR is a prominent receptor that is responsible for xenobiotic excretion and drug-drug interactions. Pyrimidinone 1 is an antagonist of the calcium sensing receptor (CaSR) and a strong activator of PXR. Repeat oral administration revealed diminished exposures over time, which prohibited further progression. A medicinal chemistry campaign was initiated to understand and abolish activation of PXR in order to increase systemic exposures. Rational structure-activity relationship investigations utilizing cocrystal structures and a de novo pharmacophore model resulted in compounds devoid of PXR activation. These studies culminated in the first orally active CaSR antagonist 8 suitable for progression. Cocrystallography, the pharmacophore model employed, and additional observations reported herein supported rational elimination of PXR activation and have applicability across diverse chemical classes to help erase PXR-driven drug-drug interactions.

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Primary Citation of related structures