7RG8 image
Deposition Date 2021-07-14
Release Date 2022-03-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7RG8
Keywords:
Title:
Crystal Structure of a Stable Heparanase Mutant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Heparanase 50 kDa subunit
Gene (Uniprot):HPSE
Mutagens:N178K, A195S, L197G, S212A, S219D, L230R, D234G, E244K, Q248H, R273G, S292A, R307L, I318T, S322Q, F327L, L354G, S426Q, K427D, K477Q, L483H, H486D, L498Q, M512K, E513P, S530A, A540P
Chain IDs:A
Chain Length:387
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Heparanase 8 kDa subunit
Gene (Uniprot):HPSE
Chain IDs:B
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Computational design and experimental characterisation of a stable human heparanase variant.
Rsc Chem Biol 3 341 349 (2022)
PMID: 35382258 DOI: 10.1039/d1cb00239b

Abstact

Heparanase is the only human enzyme known to hydrolyse heparin sulfate and is involved in many important physiological processes. However, it is also unregulated in many disease states, such as cancer, diabetes and Covid-19. It is thus an important drug target, yet the heterologous production of heparanase is challenging and only possible in mammalian or insect expression systems, which limits the ability of many laboratories to study it. Here we describe the computational redesign of heparanase to allow high yield expression in Escherchia coli. This mutated form of heparanase exhibits essentially identical kinetics, inhibition, structure and protein dynamics to the wild type protein, despite the presence of 26 mutations. This variant will facilitate wider study of this important enzyme and contributes to a growing body of literature that shows evolutionarily conserved and functionally neutral mutations can have significant effects on protein folding and expression.

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