7RDW image
Entry Detail
PDB ID:
7RDW
Keywords:
Title:
Crystal Structure of FH1 Fab bound to HXb2 HIV-1 gp120 core
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2021-07-12
Release Date:
2022-05-25
Method Details:
Experimental Method:
Resolution:
3.55 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycoprotein 120
Chain IDs:A (auth: C), B (auth: D), G (auth: M), H (auth: N)
Chain Length:373
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:FH1 Fab Heavy Chain
Chain IDs:C (auth: G), K (auth: U)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:FH1 Fab Heavy Chain
Chain IDs:D (auth: H), I (auth: Q)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:FH1 Fab Light Chain
Chain IDs:E (auth: I), F (auth: L), J (auth: R), L (auth: V)
Chain Length:211
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Characterization of a vaccine-elicited human antibody with sequence homology to VRC01-class antibodies that binds the C1C2 gp120 domain.
Sci Adv 8 eabm3948 eabm3948 (2022)
PMID: 35507661 DOI: 10.1126/sciadv.abm3948

Abstact

Broadly HIV-1-neutralizing VRC01-class antibodies bind the CD4-binding site of Env and contain VH1-2*02-derived heavy chains paired with light chains expressing five-amino acid-long CDRL3s. Their unmutated germline forms do not recognize HIV-1 Env, and their lack of elicitation in human clinical trials could be due to the absence of activation of the corresponding naïve B cells by the vaccine immunogens. To address this point, we examined Env-specific B cell receptor sequences from participants in the HVTN 100 clinical trial. Of all the sequences analyzed, only one displayed homology to VRC01-class antibodies, but the corresponding antibody (FH1) recognized the C1C2 gp120 domain. For FH1 to switch epitope recognition to the CD4-binding site, alterations in the CDRH3 and CDRL3 were necessary. Only germ line-targeting Env immunogens efficiently activated VRC01 B cells, even in the presence of FH1 B cells. Our findings support the use of these immunogens to activate VRC01 B cells in humans.

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