7RDV image
Deposition Date 2021-07-11
Release Date 2022-07-27
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7RDV
Keywords:
IMMUNE SYSTEM
Title:
TFH TCR bound to MHC Class II IAd presenting aggrecan epitope
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Baculovirus expression vector pFastBac1-HM
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 31 2 1
7RDV validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 class II histocompatibility antigen, A-D alpha chain
Gene (Uniprot):H2-Aa
Chain IDs:A
Chain Length:181
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:P04228 Pfam ID:PF00993, PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 class II histocompatibility antigen, A-D beta chain
Gene (Uniprot):H2-Ab1
Chain IDs:B
Chain Length:186
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:P01921 Pfam ID:PF00969, PF07654
Polymer Type:polypeptide(L)
Molecule:TFH TCR alpha chain
Chain IDs:C
Chain Length:205
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:TFH TCR beta chain
Chain IDs:D
Chain Length:240
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aggrecan core peptide
Chain IDs:E (auth: H)
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P16112
Ligand Molecules
NAG
Primary Citation
TFH TCR bound to MHC Class II IAd presenting aggrecan epitope
To Be Published ? ? ? (?)
Primary Citation of related structures
7RDV