7RCV image
Entry Detail
PDB ID:
7RCV
EMDB ID:
Keywords:
Title:
High-resolution structure of photosystem II from the mesophilic cyanobacterium, Synechocystis sp. PCC 6803
Biological Source:
PDB Version:
Deposition Date:
2021-07-08
Release Date:
2021-12-29
Method Details:
Experimental Method:
Resolution:
2.01 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Photosystem II protein D1 2
Chain IDs:A, V (auth: a)
Chain Length:360
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II CP47 reaction center protein
Chain IDs:B, W (auth: b)
Chain Length:507
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II CP43 reaction center protein
Chain IDs:C, X (auth: c)
Chain Length:460
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II D2 protein
Chain IDs:D, Y (auth: d)
Chain Length:352
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Cytochrome b559 subunit alpha
Chain IDs:E, Z (auth: e)
Chain Length:81
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Cytochrome b559 subunit beta
Chain IDs:F, AA (auth: f)
Chain Length:44
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein H
Chain IDs:G (auth: H), BA (auth: h)
Chain Length:64
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein I
Chain IDs:H (auth: I), CA (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein J
Chain IDs:I (auth: J), DA (auth: j)
Chain Length:39
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein K
Chain IDs:J (auth: K), EA (auth: k)
Chain Length:45
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein L
Chain IDs:K (auth: L), FA (auth: l)
Chain Length:39
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein M
Chain IDs:L (auth: M), GA (auth: m)
Chain Length:35
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II manganese-stabilizing polypeptide
Chain IDs:M (auth: O), HA (auth: o)
Chain Length:247
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Sll1638 protein
Chain IDs:N (auth: Q), IA (auth: q)
Chain Length:149
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II protein Y
Chain IDs:O (auth: R), JA (auth: r)
Chain Length:39
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein T
Chain IDs:P (auth: T), KA (auth: t)
Chain Length:31
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II 12 kDa extrinsic protein
Chain IDs:Q (auth: U), LA (auth: u)
Chain Length:131
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Cytochrome c-550
Chain IDs:R (auth: V), MA (auth: v)
Chain Length:160
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center X protein
Chain IDs:S (auth: X), NA (auth: x)
Chain Length:39
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein Ycf12
Chain IDs:T (auth: Y), OA (auth: y)
Chain Length:39
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein Z
Chain IDs:U (auth: Z), PA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME H MET modified residue
Primary Citation
High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium, Synechocystis sp. PCC 6803.
Proc.Natl.Acad.Sci.USA 119 ? ? (2022)
PMID: 34937700 DOI: 10.1073/pnas.2116765118

Abstact

Photosystem II (PSII) enables global-scale, light-driven water oxidation. Genetic manipulation of PSII from the mesophilic cyanobacterium Synechocystis sp. PCC 6803 has provided insights into the mechanism of water oxidation; however, the lack of a high-resolution structure of oxygen-evolving PSII from this organism has limited the interpretation of biophysical data to models based on structures of thermophilic cyanobacterial PSII. Here, we report the cryo-electron microscopy structure of PSII from Synechocystis sp. PCC 6803 at 1.93-Å resolution. A number of differences are observed relative to thermophilic PSII structures, including the following: the extrinsic subunit PsbQ is maintained, the C terminus of the D1 subunit is flexible, some waters near the active site are partially occupied, and differences in the PsbV subunit block the Large (O1) water channel. These features strongly influence the structural picture of PSII, especially as it pertains to the mechanism of water oxidation.

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Primary Citation of related structures